Strain Fitness in Dechlorosoma suillum PS around Dsui_2052

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2049 and Dsui_2050 are separated by 59 nucleotidesDsui_2050 and Dsui_2051 are separated by 270 nucleotidesDsui_2051 and Dsui_2052 overlap by 4 nucleotidesDsui_2052 and Dsui_2053 are separated by 137 nucleotidesDsui_2053 and Dsui_2054 are separated by 16 nucleotides Dsui_2049: Dsui_2049 - ABC-type uncharacterized transport system, permease and ATPase component, at 2,170,240 to 2,171,943 _2049 Dsui_2050: Dsui_2050 - hypothetical protein, at 2,172,003 to 2,172,377 _2050 Dsui_2051: Dsui_2051 - hypothetical protein, at 2,172,648 to 2,172,818 _2051 Dsui_2052: Dsui_2052 - hypothetical protein, at 2,172,815 to 2,173,012 _2052 Dsui_2053: Dsui_2053 - HNH endonuclease, at 2,173,150 to 2,173,530 _2053 Dsui_2054: Dsui_2054 - hypothetical protein, at 2,173,547 to 2,173,915 _2054 Position (kb) 2172 2173 2174Strain fitness (log2 ratio) -1 0 1 2at 2171.822 kb on + strandat 2171.850 kb on + strandat 2172.045 kb on - strand, within Dsui_2050at 2172.106 kb on + strand, within Dsui_2050at 2172.111 kb on + strandat 2172.114 kb on - strand, within Dsui_2050at 2172.114 kb on - strand, within Dsui_2050at 2172.119 kb on - strand, within Dsui_2050at 2172.217 kb on - strand, within Dsui_2050at 2172.386 kb on - strandat 2172.405 kb on - strandat 2172.667 kb on + strand, within Dsui_2051at 2172.677 kb on + strandat 2172.729 kb on - strand, within Dsui_2051at 2172.831 kb on + strandat 2172.908 kb on + strand, within Dsui_2052at 2172.931 kb on - strand, within Dsui_2052at 2172.964 kb on - strand, within Dsui_2052at 2172.972 kb on + strand, within Dsui_2052at 2173.083 kb on - strandat 2173.147 kb on + strandat 2173.153 kb on + strandat 2173.160 kb on + strandat 2173.168 kb on - strandat 2173.181 kb on + strandat 2173.243 kb on + strand, within Dsui_2053at 2173.359 kb on - strand, within Dsui_2053at 2173.448 kb on + strand, within Dsui_2053at 2173.503 kb on - strandat 2173.503 kb on - strandat 2173.525 kb on + strandat 2173.592 kb on + strandat 2173.624 kb on + strand, within Dsui_2054at 2173.714 kb on - strand, within Dsui_2054at 2173.778 kb on + strand, within Dsui_2054at 2173.809 kb on - strand, within Dsui_2054at 2173.941 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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2,171,822 + +1.2
2,171,850 + -0.1
2,172,045 - Dsui_2050 0.11 +1.2
2,172,106 + Dsui_2050 0.27 +0.5
2,172,111 + +2.5
2,172,114 - Dsui_2050 0.30 +0.9
2,172,114 - Dsui_2050 0.30 +0.9
2,172,119 - Dsui_2050 0.31 -0.2
2,172,217 - Dsui_2050 0.57 +0.1
2,172,386 - -0.7
2,172,405 - -0.4
2,172,667 + Dsui_2051 0.11 -0.3
2,172,677 + -1.3
2,172,729 - Dsui_2051 0.47 +0.3
2,172,831 + +0.7
2,172,908 + Dsui_2052 0.47 +0.4
2,172,931 - Dsui_2052 0.59 +0.1
2,172,964 - Dsui_2052 0.75 +1.1
2,172,972 + Dsui_2052 0.79 +0.6
2,173,083 - +0.0
2,173,147 + -0.5
2,173,153 + +0.1
2,173,160 + +0.3
2,173,168 - +0.5
2,173,181 + +1.1
2,173,243 + Dsui_2053 0.24 +0.5
2,173,359 - Dsui_2053 0.55 -0.1
2,173,448 + Dsui_2053 0.78 -0.7
2,173,503 - +0.0
2,173,503 - -0.1
2,173,525 + +0.4
2,173,592 + +1.5
2,173,624 + Dsui_2054 0.21 +0.5
2,173,714 - Dsui_2054 0.45 +0.1
2,173,778 + Dsui_2054 0.63 +1.5
2,173,809 - Dsui_2054 0.71 -0.1
2,173,941 - +0.1

Or see this region's nucleotide sequence