Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2049 and Dsui_2050 are separated by 59 nucleotides Dsui_2050 and Dsui_2051 are separated by 270 nucleotides Dsui_2051 and Dsui_2052 overlap by 4 nucleotides Dsui_2052 and Dsui_2053 are separated by 137 nucleotides Dsui_2053 and Dsui_2054 are separated by 16 nucleotides
Dsui_2049: Dsui_2049 - ABC-type uncharacterized transport system, permease and ATPase component, at 2,170,240 to 2,171,943
_2049
Dsui_2050: Dsui_2050 - hypothetical protein, at 2,172,003 to 2,172,377
_2050
Dsui_2051: Dsui_2051 - hypothetical protein, at 2,172,648 to 2,172,818
_2051
Dsui_2052: Dsui_2052 - hypothetical protein, at 2,172,815 to 2,173,012
_2052
Dsui_2053: Dsui_2053 - HNH endonuclease, at 2,173,150 to 2,173,530
_2053
Dsui_2054: Dsui_2054 - hypothetical protein, at 2,173,547 to 2,173,915
_2054
Position (kb)
2172
2173
2174 Strain fitness (log2 ratio)
-1
0
1
2 at 2171.822 kb on + strand at 2171.850 kb on + strand at 2172.045 kb on - strand, within Dsui_2050 at 2172.106 kb on + strand, within Dsui_2050 at 2172.111 kb on + strand at 2172.114 kb on - strand, within Dsui_2050 at 2172.114 kb on - strand, within Dsui_2050 at 2172.119 kb on - strand, within Dsui_2050 at 2172.217 kb on - strand, within Dsui_2050 at 2172.386 kb on - strand at 2172.405 kb on - strand at 2172.667 kb on + strand, within Dsui_2051 at 2172.677 kb on + strand at 2172.729 kb on - strand, within Dsui_2051 at 2172.831 kb on + strand at 2172.908 kb on + strand, within Dsui_2052 at 2172.931 kb on - strand, within Dsui_2052 at 2172.964 kb on - strand, within Dsui_2052 at 2172.972 kb on + strand, within Dsui_2052 at 2173.083 kb on - strand at 2173.147 kb on + strand at 2173.153 kb on + strand at 2173.160 kb on + strand at 2173.168 kb on - strand at 2173.181 kb on + strand at 2173.243 kb on + strand, within Dsui_2053 at 2173.359 kb on - strand, within Dsui_2053 at 2173.448 kb on + strand, within Dsui_2053 at 2173.503 kb on - strand at 2173.503 kb on - strand at 2173.525 kb on + strand at 2173.592 kb on + strand at 2173.624 kb on + strand, within Dsui_2054 at 2173.714 kb on - strand, within Dsui_2054 at 2173.778 kb on + strand, within Dsui_2054 at 2173.809 kb on - strand, within Dsui_2054 at 2173.941 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 2,171,822 + +1.2 2,171,850 + -0.1 2,172,045 - Dsui_2050 0.11 +1.2 2,172,106 + Dsui_2050 0.27 +0.5 2,172,111 + +2.5 2,172,114 - Dsui_2050 0.30 +0.9 2,172,114 - Dsui_2050 0.30 +0.9 2,172,119 - Dsui_2050 0.31 -0.2 2,172,217 - Dsui_2050 0.57 +0.1 2,172,386 - -0.7 2,172,405 - -0.4 2,172,667 + Dsui_2051 0.11 -0.3 2,172,677 + -1.3 2,172,729 - Dsui_2051 0.47 +0.3 2,172,831 + +0.7 2,172,908 + Dsui_2052 0.47 +0.4 2,172,931 - Dsui_2052 0.59 +0.1 2,172,964 - Dsui_2052 0.75 +1.1 2,172,972 + Dsui_2052 0.79 +0.6 2,173,083 - +0.0 2,173,147 + -0.5 2,173,153 + +0.1 2,173,160 + +0.3 2,173,168 - +0.5 2,173,181 + +1.1 2,173,243 + Dsui_2053 0.24 +0.5 2,173,359 - Dsui_2053 0.55 -0.1 2,173,448 + Dsui_2053 0.78 -0.7 2,173,503 - +0.0 2,173,503 - -0.1 2,173,525 + +0.4 2,173,592 + +1.5 2,173,624 + Dsui_2054 0.21 +0.5 2,173,714 - Dsui_2054 0.45 +0.1 2,173,778 + Dsui_2054 0.63 +1.5 2,173,809 - Dsui_2054 0.71 -0.1 2,173,941 - +0.1
Or see this region's nucleotide sequence