Strain Fitness in Dechlorosoma suillum PS around Dsui_1908

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1907 and Dsui_1908 are separated by 75 nucleotidesDsui_1908 and Dsui_1910 are separated by 362 nucleotidesDsui_1910 and Dsui_1911 are separated by 134 nucleotides Dsui_1907: Dsui_1907 - transcriptional regulator, at 2,010,386 to 2,011,264 _1907 Dsui_1908: Dsui_1908 - putative Fe-S-cluster redox enzyme, at 2,011,340 to 2,012,671 _1908 Dsui_1910: Dsui_1910 - hypothetical protein, at 2,013,034 to 2,013,381 _1910 Dsui_1911: Dsui_1911 - ParB-like partition protein, at 2,013,516 to 2,014,454 _1911 Position (kb) 2011 2012 2013Strain fitness (log2 ratio) -1 0 1 2at 2010.364 kb on - strandat 2010.376 kb on + strandat 2010.394 kb on + strandat 2010.403 kb on - strandat 2010.413 kb on - strandat 2010.424 kb on - strandat 2010.497 kb on - strandat 2010.759 kb on + strandat 2010.780 kb on - strand, within Dsui_1907at 2010.836 kb on - strandat 2010.836 kb on - strandat 2010.866 kb on + strand, within Dsui_1907at 2010.874 kb on - strand, within Dsui_1907at 2010.902 kb on + strandat 2010.904 kb on + strand, within Dsui_1907at 2011.402 kb on - strandat 2011.463 kb on + strandat 2011.471 kb on - strandat 2011.477 kb on + strand, within Dsui_1908at 2011.531 kb on + strand, within Dsui_1908at 2011.552 kb on + strand, within Dsui_1908at 2011.560 kb on - strandat 2011.655 kb on - strandat 2012.070 kb on + strand, within Dsui_1908at 2012.100 kb on + strand, within Dsui_1908at 2012.265 kb on + strand, within Dsui_1908at 2012.488 kb on - strand, within Dsui_1908at 2012.519 kb on + strand, within Dsui_1908at 2012.704 kb on - strandat 2012.704 kb on - strandat 2012.724 kb on + strandat 2012.724 kb on + strandat 2013.264 kb on + strand, within Dsui_1910at 2013.406 kb on - strandat 2013.443 kb on + strandat 2013.615 kb on - strand, within Dsui_1911

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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2,010,364 - +0.5
2,010,376 + -0.8
2,010,394 + +1.1
2,010,403 - +0.5
2,010,413 - +1.5
2,010,424 - -1.1
2,010,497 - +0.5
2,010,759 + -0.5
2,010,780 - Dsui_1907 0.45 +1.5
2,010,836 - +2.1
2,010,836 - +1.5
2,010,866 + Dsui_1907 0.55 +0.2
2,010,874 - Dsui_1907 0.56 -1.5
2,010,902 + -0.1
2,010,904 + Dsui_1907 0.59 +0.1
2,011,402 - -0.1
2,011,463 + +0.9
2,011,471 - +1.5
2,011,477 + Dsui_1908 0.10 -0.4
2,011,531 + Dsui_1908 0.14 +0.5
2,011,552 + Dsui_1908 0.16 +0.7
2,011,560 - +0.5
2,011,655 - +1.5
2,012,070 + Dsui_1908 0.55 +0.2
2,012,100 + Dsui_1908 0.57 +0.4
2,012,265 + Dsui_1908 0.69 -1.1
2,012,488 - Dsui_1908 0.86 +1.2
2,012,519 + Dsui_1908 0.89 +0.3
2,012,704 - -0.6
2,012,704 - +0.3
2,012,724 + +0.6
2,012,724 + +0.4
2,013,264 + Dsui_1910 0.66 +0.5
2,013,406 - -0.8
2,013,443 + -0.0
2,013,615 - Dsui_1911 0.11 +0.6

Or see this region's nucleotide sequence