Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1905 and Dsui_1906 are separated by 261 nucleotides Dsui_1906 and Dsui_1907 are separated by 168 nucleotides
Dsui_1905: Dsui_1905 - PAS domain S-box, at 2,006,720 to 2,009,239
_1905
Dsui_1906: Dsui_1906 - uncharacterized membrane protein, possible Na+ channel or pump, at 2,009,501 to 2,010,217
_1906
Dsui_1907: Dsui_1907 - transcriptional regulator, at 2,010,386 to 2,011,264
_1907
Position (kb)
2009
2010
2011 Strain fitness (log2 ratio)
-1
0
1
2 at 2008.533 kb on + strand at 2008.617 kb on - strand, within Dsui_1905 at 2008.639 kb on + strand, within Dsui_1905 at 2008.647 kb on - strand, within Dsui_1905 at 2008.752 kb on - strand, within Dsui_1905 at 2008.754 kb on + strand at 2008.769 kb on - strand, within Dsui_1905 at 2008.818 kb on + strand at 2008.886 kb on + strand at 2008.887 kb on + strand at 2008.893 kb on + strand at 2009.167 kb on + strand at 2009.258 kb on - strand at 2009.542 kb on - strand at 2009.549 kb on - strand at 2009.780 kb on - strand at 2009.788 kb on + strand at 2009.798 kb on + strand at 2009.822 kb on + strand at 2009.873 kb on - strand at 2009.965 kb on - strand at 2009.976 kb on + strand at 2009.977 kb on - strand, within Dsui_1906 at 2010.065 kb on - strand at 2010.076 kb on + strand, within Dsui_1906 at 2010.084 kb on - strand, within Dsui_1906 at 2010.182 kb on + strand at 2010.195 kb on + strand at 2010.364 kb on - strand at 2010.376 kb on + strand at 2010.394 kb on + strand at 2010.403 kb on - strand at 2010.413 kb on - strand at 2010.424 kb on - strand at 2010.497 kb on - strand at 2010.759 kb on + strand at 2010.780 kb on - strand, within Dsui_1907 at 2010.836 kb on - strand at 2010.836 kb on - strand at 2010.866 kb on + strand, within Dsui_1907 at 2010.874 kb on - strand, within Dsui_1907 at 2010.902 kb on + strand at 2010.904 kb on + strand, within Dsui_1907
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 2,008,533 + +1.1 2,008,617 - Dsui_1905 0.75 +0.6 2,008,639 + Dsui_1905 0.76 +0.3 2,008,647 - Dsui_1905 0.76 +0.4 2,008,752 - Dsui_1905 0.81 -1.6 2,008,754 + +1.5 2,008,769 - Dsui_1905 0.81 -0.1 2,008,818 + -1.1 2,008,886 + +2.5 2,008,887 + +1.5 2,008,893 + +2.1 2,009,167 + -0.5 2,009,258 - +0.4 2,009,542 - +2.5 2,009,549 - +1.5 2,009,780 - +1.5 2,009,788 + -0.1 2,009,798 + +2.1 2,009,822 + +1.5 2,009,873 - +1.5 2,009,965 - +0.5 2,009,976 + +0.5 2,009,977 - Dsui_1906 0.66 -1.1 2,010,065 - +2.5 2,010,076 + Dsui_1906 0.80 +1.5 2,010,084 - Dsui_1906 0.81 -0.1 2,010,182 + -0.4 2,010,195 + +0.5 2,010,364 - +0.5 2,010,376 + -0.8 2,010,394 + +1.1 2,010,403 - +0.5 2,010,413 - +1.5 2,010,424 - -1.1 2,010,497 - +0.5 2,010,759 + -0.5 2,010,780 - Dsui_1907 0.45 +1.5 2,010,836 - +2.1 2,010,836 - +1.5 2,010,866 + Dsui_1907 0.55 +0.2 2,010,874 - Dsui_1907 0.56 -1.5 2,010,902 + -0.1 2,010,904 + Dsui_1907 0.59 +0.1
Or see this region's nucleotide sequence