Strain Fitness in Dechlorosoma suillum PS around Dsui_1906

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1905 and Dsui_1906 are separated by 261 nucleotidesDsui_1906 and Dsui_1907 are separated by 168 nucleotides Dsui_1905: Dsui_1905 - PAS domain S-box, at 2,006,720 to 2,009,239 _1905 Dsui_1906: Dsui_1906 - uncharacterized membrane protein, possible Na+ channel or pump, at 2,009,501 to 2,010,217 _1906 Dsui_1907: Dsui_1907 - transcriptional regulator, at 2,010,386 to 2,011,264 _1907 Position (kb) 2009 2010 2011Strain fitness (log2 ratio) -1 0 1 2at 2008.533 kb on + strandat 2008.617 kb on - strand, within Dsui_1905at 2008.639 kb on + strand, within Dsui_1905at 2008.647 kb on - strand, within Dsui_1905at 2008.752 kb on - strand, within Dsui_1905at 2008.754 kb on + strandat 2008.769 kb on - strand, within Dsui_1905at 2008.818 kb on + strandat 2008.886 kb on + strandat 2008.887 kb on + strandat 2008.893 kb on + strandat 2009.167 kb on + strandat 2009.258 kb on - strandat 2009.542 kb on - strandat 2009.549 kb on - strandat 2009.780 kb on - strandat 2009.788 kb on + strandat 2009.798 kb on + strandat 2009.822 kb on + strandat 2009.873 kb on - strandat 2009.965 kb on - strandat 2009.976 kb on + strandat 2009.977 kb on - strand, within Dsui_1906at 2010.065 kb on - strandat 2010.076 kb on + strand, within Dsui_1906at 2010.084 kb on - strand, within Dsui_1906at 2010.182 kb on + strandat 2010.195 kb on + strandat 2010.364 kb on - strandat 2010.376 kb on + strandat 2010.394 kb on + strandat 2010.403 kb on - strandat 2010.413 kb on - strandat 2010.424 kb on - strandat 2010.497 kb on - strandat 2010.759 kb on + strandat 2010.780 kb on - strand, within Dsui_1907at 2010.836 kb on - strandat 2010.836 kb on - strandat 2010.866 kb on + strand, within Dsui_1907at 2010.874 kb on - strand, within Dsui_1907at 2010.902 kb on + strandat 2010.904 kb on + strand, within Dsui_1907

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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2,008,533 + +1.1
2,008,617 - Dsui_1905 0.75 +0.6
2,008,639 + Dsui_1905 0.76 +0.3
2,008,647 - Dsui_1905 0.76 +0.4
2,008,752 - Dsui_1905 0.81 -1.6
2,008,754 + +1.5
2,008,769 - Dsui_1905 0.81 -0.1
2,008,818 + -1.1
2,008,886 + +2.5
2,008,887 + +1.5
2,008,893 + +2.1
2,009,167 + -0.5
2,009,258 - +0.4
2,009,542 - +2.5
2,009,549 - +1.5
2,009,780 - +1.5
2,009,788 + -0.1
2,009,798 + +2.1
2,009,822 + +1.5
2,009,873 - +1.5
2,009,965 - +0.5
2,009,976 + +0.5
2,009,977 - Dsui_1906 0.66 -1.1
2,010,065 - +2.5
2,010,076 + Dsui_1906 0.80 +1.5
2,010,084 - Dsui_1906 0.81 -0.1
2,010,182 + -0.4
2,010,195 + +0.5
2,010,364 - +0.5
2,010,376 + -0.8
2,010,394 + +1.1
2,010,403 - +0.5
2,010,413 - +1.5
2,010,424 - -1.1
2,010,497 - +0.5
2,010,759 + -0.5
2,010,780 - Dsui_1907 0.45 +1.5
2,010,836 - +2.1
2,010,836 - +1.5
2,010,866 + Dsui_1907 0.55 +0.2
2,010,874 - Dsui_1907 0.56 -1.5
2,010,902 + -0.1
2,010,904 + Dsui_1907 0.59 +0.1

Or see this region's nucleotide sequence