Strain Fitness in Dechlorosoma suillum PS around Dsui_1761

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1760 and Dsui_1761 are separated by 53 nucleotidesDsui_1761 and Dsui_1762 are separated by 42 nucleotidesDsui_1762 and Dsui_1763 are separated by 73 nucleotides Dsui_1760: Dsui_1760 - putative O-linked N-acetylglucosamine transferase, SPINDLY family, at 1,847,395 to 1,849,272 _1760 Dsui_1761: Dsui_1761 - methylase involved in ubiquinone/menaquinone biosynthesis, at 1,849,326 to 1,850,357 _1761 Dsui_1762: Dsui_1762 - methylase involved in ubiquinone/menaquinone biosynthesis, at 1,850,400 to 1,850,894 _1762 Dsui_1763: Dsui_1763 - subfamily IIIC HAD-superfamily phosphatase, at 1,850,968 to 1,852,668 _1763 Position (kb) 1849 1850 1851Strain fitness (log2 ratio) -2 -1 0 1at 1848.488 kb on + strand, within Dsui_1760at 1848.491 kb on - strand, within Dsui_1760at 1848.516 kb on + strand, within Dsui_1760at 1848.519 kb on - strand, within Dsui_1760at 1848.706 kb on - strand, within Dsui_1760at 1848.706 kb on - strand, within Dsui_1760at 1848.766 kb on - strand, within Dsui_1760at 1848.839 kb on + strand, within Dsui_1760at 1848.875 kb on - strand, within Dsui_1760at 1849.092 kb on - strandat 1849.092 kb on - strandat 1849.219 kb on - strandat 1849.252 kb on - strandat 1849.258 kb on - strandat 1849.268 kb on + strandat 1849.268 kb on - strandat 1849.268 kb on - strandat 1849.316 kb on + strandat 1849.316 kb on + strandat 1849.319 kb on - strandat 1849.324 kb on - strandat 1849.324 kb on - strandat 1849.326 kb on + strandat 1849.366 kb on - strandat 1849.370 kb on + strandat 1849.378 kb on + strandat 1849.378 kb on - strandat 1849.540 kb on - strand, within Dsui_1761at 1849.563 kb on + strand, within Dsui_1761at 1849.570 kb on - strand, within Dsui_1761at 1849.650 kb on + strand, within Dsui_1761at 1849.664 kb on + strand, within Dsui_1761at 1849.672 kb on - strand, within Dsui_1761at 1849.765 kb on + strand, within Dsui_1761at 1849.789 kb on + strand, within Dsui_1761at 1849.789 kb on + strand, within Dsui_1761at 1849.873 kb on - strand, within Dsui_1761at 1849.877 kb on + strand, within Dsui_1761at 1850.052 kb on - strand, within Dsui_1761at 1850.052 kb on - strand, within Dsui_1761at 1850.052 kb on - strand, within Dsui_1761at 1850.082 kb on - strand, within Dsui_1761at 1850.090 kb on + strand, within Dsui_1761at 1850.094 kb on - strand, within Dsui_1761at 1850.118 kb on - strand, within Dsui_1761at 1850.216 kb on - strand, within Dsui_1761at 1850.314 kb on - strandat 1850.319 kb on - strandat 1850.410 kb on + strandat 1850.415 kb on + strandat 1850.436 kb on + strandat 1850.465 kb on + strand, within Dsui_1762at 1850.522 kb on - strand, within Dsui_1762at 1850.530 kb on - strand, within Dsui_1762at 1850.536 kb on - strand, within Dsui_1762at 1850.592 kb on - strand, within Dsui_1762at 1850.595 kb on + strand, within Dsui_1762at 1850.618 kb on + strand, within Dsui_1762at 1850.651 kb on - strand, within Dsui_1762at 1850.701 kb on + strand, within Dsui_1762at 1850.756 kb on + strand, within Dsui_1762at 1850.757 kb on + strand, within Dsui_1762at 1850.758 kb on + strand, within Dsui_1762at 1850.758 kb on + strand, within Dsui_1762at 1850.764 kb on - strandat 1850.766 kb on - strand, within Dsui_1762at 1850.781 kb on + strand, within Dsui_1762at 1850.815 kb on - strand, within Dsui_1762at 1851.000 kb on + strandat 1851.151 kb on + strand, within Dsui_1763at 1851.276 kb on + strand, within Dsui_1763at 1851.285 kb on - strand, within Dsui_1763at 1851.312 kb on - strand, within Dsui_1763at 1851.326 kb on + strand, within Dsui_1763

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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1,848,488 + Dsui_1760 0.58 -0.5
1,848,491 - Dsui_1760 0.58 -0.1
1,848,516 + Dsui_1760 0.60 -1.3
1,848,519 - Dsui_1760 0.60 -0.8
1,848,706 - Dsui_1760 0.70 +0.1
1,848,706 - Dsui_1760 0.70 -0.1
1,848,766 - Dsui_1760 0.73 -0.8
1,848,839 + Dsui_1760 0.77 -1.4
1,848,875 - Dsui_1760 0.79 -0.5
1,849,092 - -1.5
1,849,092 - -0.6
1,849,219 - -0.5
1,849,252 - +0.7
1,849,258 - -0.3
1,849,268 + +0.2
1,849,268 - -0.7
1,849,268 - +0.1
1,849,316 + -0.1
1,849,316 + -0.3
1,849,319 - +0.4
1,849,324 - -0.7
1,849,324 - -1.0
1,849,326 + +0.0
1,849,366 - +1.7
1,849,370 + +0.4
1,849,378 + +0.3
1,849,378 - -0.8
1,849,540 - Dsui_1761 0.21 -1.9
1,849,563 + Dsui_1761 0.23 +0.5
1,849,570 - Dsui_1761 0.24 +0.7
1,849,650 + Dsui_1761 0.31 +0.0
1,849,664 + Dsui_1761 0.33 -0.1
1,849,672 - Dsui_1761 0.34 +0.4
1,849,765 + Dsui_1761 0.43 -0.5
1,849,789 + Dsui_1761 0.45 +0.0
1,849,789 + Dsui_1761 0.45 +0.3
1,849,873 - Dsui_1761 0.53 -0.2
1,849,877 + Dsui_1761 0.53 -0.2
1,850,052 - Dsui_1761 0.70 -0.0
1,850,052 - Dsui_1761 0.70 +0.4
1,850,052 - Dsui_1761 0.70 +0.2
1,850,082 - Dsui_1761 0.73 +0.2
1,850,090 + Dsui_1761 0.74 +0.1
1,850,094 - Dsui_1761 0.74 +0.5
1,850,118 - Dsui_1761 0.77 +0.0
1,850,216 - Dsui_1761 0.86 +0.3
1,850,314 - -1.2
1,850,319 - +0.1
1,850,410 + +0.0
1,850,415 + +0.3
1,850,436 + +0.2
1,850,465 + Dsui_1762 0.13 +0.3
1,850,522 - Dsui_1762 0.25 -0.4
1,850,530 - Dsui_1762 0.26 -0.8
1,850,536 - Dsui_1762 0.27 +0.1
1,850,592 - Dsui_1762 0.39 +1.2
1,850,595 + Dsui_1762 0.39 +0.2
1,850,618 + Dsui_1762 0.44 -0.1
1,850,651 - Dsui_1762 0.51 -0.2
1,850,701 + Dsui_1762 0.61 +0.1
1,850,756 + Dsui_1762 0.72 +0.1
1,850,757 + Dsui_1762 0.72 -0.4
1,850,758 + Dsui_1762 0.72 -0.5
1,850,758 + Dsui_1762 0.72 -0.1
1,850,764 - -0.9
1,850,766 - Dsui_1762 0.74 -0.6
1,850,781 + Dsui_1762 0.77 +0.4
1,850,815 - Dsui_1762 0.84 +0.7
1,851,000 + +0.6
1,851,151 + Dsui_1763 0.11 +0.2
1,851,276 + Dsui_1763 0.18 -0.0
1,851,285 - Dsui_1763 0.19 +0.3
1,851,312 - Dsui_1763 0.20 +1.6
1,851,326 + Dsui_1763 0.21 -0.2

Or see this region's nucleotide sequence