Strain Fitness in Dechlorosoma suillum PS around Dsui_1725

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1724 and Dsui_1725 overlap by 20 nucleotidesDsui_1725 and Dsui_1726 are separated by 12 nucleotidesDsui_1726 and Dsui_1727 overlap by 8 nucleotides Dsui_1724: Dsui_1724 - flagellar biosynthetic protein FlhF, at 1,815,505 to 1,816,872 _1724 Dsui_1725: Dsui_1725 - ATPase involved in chromosome partitioning, at 1,816,853 to 1,817,755 _1725 Dsui_1726: Dsui_1726 - RNA polymerase sigma factor, FliA/WhiG family, at 1,817,768 to 1,818,508 _1726 Dsui_1727: Dsui_1727 - flagellar motor component, at 1,818,501 to 1,819,241 _1727 Position (kb) 1816 1817 1818Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1815.909 kb on + strand, within Dsui_1724at 1815.951 kb on + strand, within Dsui_1724at 1815.981 kb on + strand, within Dsui_1724at 1815.989 kb on - strand, within Dsui_1724at 1816.003 kb on + strand, within Dsui_1724at 1816.010 kb on - strand, within Dsui_1724at 1816.122 kb on + strand, within Dsui_1724at 1816.252 kb on - strand, within Dsui_1724at 1816.299 kb on + strand, within Dsui_1724at 1816.338 kb on - strand, within Dsui_1724at 1816.375 kb on + strand, within Dsui_1724at 1816.438 kb on - strand, within Dsui_1724at 1816.572 kb on - strand, within Dsui_1724at 1816.679 kb on + strand, within Dsui_1724at 1816.687 kb on - strand, within Dsui_1724at 1816.927 kb on - strandat 1817.019 kb on - strand, within Dsui_1725at 1817.019 kb on - strandat 1817.230 kb on - strand, within Dsui_1725at 1817.236 kb on - strand, within Dsui_1725at 1817.376 kb on + strand, within Dsui_1725at 1817.443 kb on + strand, within Dsui_1725at 1817.451 kb on - strand, within Dsui_1725at 1817.517 kb on + strand, within Dsui_1725at 1817.540 kb on + strand, within Dsui_1725at 1817.548 kb on - strand, within Dsui_1725at 1817.655 kb on + strand, within Dsui_1725at 1817.655 kb on + strand, within Dsui_1725at 1817.749 kb on - strandat 1817.750 kb on + strandat 1817.891 kb on + strand, within Dsui_1726at 1817.914 kb on + strand, within Dsui_1726at 1817.918 kb on - strand, within Dsui_1726at 1817.956 kb on + strand, within Dsui_1726at 1818.032 kb on + strand, within Dsui_1726at 1818.059 kb on + strand, within Dsui_1726at 1818.125 kb on + strand, within Dsui_1726at 1818.133 kb on - strand, within Dsui_1726at 1818.133 kb on - strand, within Dsui_1726at 1818.178 kb on - strand, within Dsui_1726at 1818.233 kb on - strand, within Dsui_1726at 1818.312 kb on + strand, within Dsui_1726at 1818.357 kb on + strand, within Dsui_1726at 1818.365 kb on - strand, within Dsui_1726at 1818.447 kb on - strandat 1818.448 kb on - strandat 1818.609 kb on - strand, within Dsui_1727at 1818.628 kb on - strand, within Dsui_1727at 1818.660 kb on - strandat 1818.703 kb on - strand, within Dsui_1727at 1818.722 kb on + strand, within Dsui_1727

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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1,815,909 + Dsui_1724 0.30 -0.6
1,815,951 + Dsui_1724 0.33 -0.5
1,815,981 + Dsui_1724 0.35 -1.0
1,815,989 - Dsui_1724 0.35 -2.3
1,816,003 + Dsui_1724 0.36 -0.1
1,816,010 - Dsui_1724 0.37 -1.4
1,816,122 + Dsui_1724 0.45 -0.5
1,816,252 - Dsui_1724 0.55 -0.6
1,816,299 + Dsui_1724 0.58 -0.7
1,816,338 - Dsui_1724 0.61 -0.2
1,816,375 + Dsui_1724 0.64 -1.0
1,816,438 - Dsui_1724 0.68 -0.7
1,816,572 - Dsui_1724 0.78 -1.4
1,816,679 + Dsui_1724 0.86 -0.4
1,816,687 - Dsui_1724 0.86 -1.4
1,816,927 - +0.2
1,817,019 - Dsui_1725 0.18 +1.0
1,817,019 - +2.0
1,817,230 - Dsui_1725 0.42 +0.4
1,817,236 - Dsui_1725 0.42 -0.3
1,817,376 + Dsui_1725 0.58 +0.7
1,817,443 + Dsui_1725 0.65 -0.3
1,817,451 - Dsui_1725 0.66 -0.2
1,817,517 + Dsui_1725 0.74 +0.6
1,817,540 + Dsui_1725 0.76 +0.5
1,817,548 - Dsui_1725 0.77 -1.2
1,817,655 + Dsui_1725 0.89 +0.1
1,817,655 + Dsui_1725 0.89 -0.1
1,817,749 - +0.7
1,817,750 + -2.0
1,817,891 + Dsui_1726 0.17 -3.6
1,817,914 + Dsui_1726 0.20 -0.1
1,817,918 - Dsui_1726 0.20 -1.3
1,817,956 + Dsui_1726 0.25 -0.3
1,818,032 + Dsui_1726 0.36 -0.5
1,818,059 + Dsui_1726 0.39 -1.1
1,818,125 + Dsui_1726 0.48 -0.5
1,818,133 - Dsui_1726 0.49 -1.0
1,818,133 - Dsui_1726 0.49 -0.5
1,818,178 - Dsui_1726 0.55 -0.4
1,818,233 - Dsui_1726 0.63 +1.0
1,818,312 + Dsui_1726 0.73 -0.2
1,818,357 + Dsui_1726 0.79 -0.6
1,818,365 - Dsui_1726 0.81 +0.1
1,818,447 - -0.1
1,818,448 - -0.8
1,818,609 - Dsui_1727 0.15 -0.5
1,818,628 - Dsui_1727 0.17 -0.5
1,818,660 - +1.4
1,818,703 - Dsui_1727 0.27 +0.6
1,818,722 + Dsui_1727 0.30 -0.0

Or see this region's nucleotide sequence