Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1719 and Dsui_1720 are separated by 3 nucleotides Dsui_1720 and Dsui_1721 are separated by 12 nucleotides Dsui_1721 and Dsui_1722 are separated by 178 nucleotides
Dsui_1719: Dsui_1719 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,808,952 to 1,809,344
_1719
Dsui_1720: Dsui_1720 - chemotaxis protein, at 1,809,348 to 1,810,214
_1720
Dsui_1721: Dsui_1721 - chemotaxis protein histidine kinase-like protein, at 1,810,227 to 1,812,116
_1721
Dsui_1722: Dsui_1722 - flagellar biosynthetic protein FlhB, at 1,812,295 to 1,813,434
_1722
Position (kb)
1810
1811
1812
1813 Strain fitness (log2 ratio)
-2
-1
0
1 at 1809.249 kb on + strand, within Dsui_1719 at 1809.249 kb on + strand, within Dsui_1719 at 1809.257 kb on - strand, within Dsui_1719 at 1809.299 kb on - strand, within Dsui_1719 at 1809.345 kb on + strand at 1809.353 kb on - strand at 1809.395 kb on + strand at 1809.517 kb on + strand, within Dsui_1720 at 1809.587 kb on + strand, within Dsui_1720 at 1809.650 kb on - strand, within Dsui_1720 at 1809.710 kb on - strand, within Dsui_1720 at 1809.865 kb on - strand, within Dsui_1720 at 1809.936 kb on + strand, within Dsui_1720 at 1809.992 kb on - strand, within Dsui_1720 at 1810.062 kb on + strand, within Dsui_1720 at 1810.191 kb on + strand at 1810.275 kb on - strand at 1810.328 kb on + strand at 1810.475 kb on - strand, within Dsui_1721 at 1810.483 kb on + strand, within Dsui_1721 at 1810.486 kb on - strand, within Dsui_1721 at 1810.491 kb on - strand, within Dsui_1721 at 1810.491 kb on - strand, within Dsui_1721 at 1810.562 kb on + strand, within Dsui_1721 at 1810.562 kb on + strand, within Dsui_1721 at 1810.562 kb on + strand, within Dsui_1721 at 1810.570 kb on - strand, within Dsui_1721 at 1810.818 kb on + strand, within Dsui_1721 at 1811.080 kb on - strand at 1811.099 kb on + strand, within Dsui_1721 at 1811.196 kb on + strand, within Dsui_1721 at 1811.261 kb on - strand, within Dsui_1721 at 1811.298 kb on - strand at 1811.429 kb on + strand, within Dsui_1721 at 1811.437 kb on - strand, within Dsui_1721 at 1811.494 kb on + strand, within Dsui_1721 at 1811.554 kb on + strand, within Dsui_1721 at 1811.568 kb on - strand, within Dsui_1721 at 1811.574 kb on - strand, within Dsui_1721 at 1811.662 kb on + strand, within Dsui_1721 at 1811.721 kb on - strand, within Dsui_1721 at 1811.834 kb on + strand, within Dsui_1721 at 1811.849 kb on - strand, within Dsui_1721 at 1811.905 kb on + strand, within Dsui_1721 at 1811.913 kb on - strand, within Dsui_1721 at 1811.913 kb on - strand, within Dsui_1721 at 1812.020 kb on - strand at 1812.055 kb on - strand at 1812.129 kb on + strand at 1812.291 kb on + strand at 1812.349 kb on + strand at 1812.438 kb on - strand, within Dsui_1722 at 1812.461 kb on + strand, within Dsui_1722 at 1812.500 kb on + strand, within Dsui_1722 at 1812.596 kb on + strand, within Dsui_1722 at 1812.625 kb on - strand, within Dsui_1722 at 1812.664 kb on + strand, within Dsui_1722 at 1812.664 kb on + strand, within Dsui_1722 at 1812.674 kb on + strand, within Dsui_1722 at 1812.723 kb on + strand, within Dsui_1722 at 1812.732 kb on + strand, within Dsui_1722 at 1812.740 kb on - strand, within Dsui_1722 at 1812.767 kb on - strand, within Dsui_1722 at 1812.779 kb on + strand, within Dsui_1722 at 1812.796 kb on - strand, within Dsui_1722 at 1812.843 kb on + strand, within Dsui_1722 at 1812.851 kb on - strand, within Dsui_1722 at 1812.950 kb on + strand, within Dsui_1722 at 1813.019 kb on - strand, within Dsui_1722 at 1813.082 kb on - strand, within Dsui_1722
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 1,809,249 + Dsui_1719 0.76 +0.5 1,809,249 + Dsui_1719 0.76 +0.4 1,809,257 - Dsui_1719 0.78 +0.1 1,809,299 - Dsui_1719 0.88 +0.1 1,809,345 + +1.2 1,809,353 - +0.3 1,809,395 + -0.2 1,809,517 + Dsui_1720 0.19 -1.4 1,809,587 + Dsui_1720 0.28 +0.4 1,809,650 - Dsui_1720 0.35 -0.2 1,809,710 - Dsui_1720 0.42 -0.6 1,809,865 - Dsui_1720 0.60 -0.7 1,809,936 + Dsui_1720 0.68 +0.1 1,809,992 - Dsui_1720 0.74 +0.7 1,810,062 + Dsui_1720 0.82 +0.3 1,810,191 + +0.7 1,810,275 - -0.2 1,810,328 + +0.6 1,810,475 - Dsui_1721 0.13 -1.1 1,810,483 + Dsui_1721 0.14 -0.2 1,810,486 - Dsui_1721 0.14 -0.1 1,810,491 - Dsui_1721 0.14 +0.4 1,810,491 - Dsui_1721 0.14 +0.1 1,810,562 + Dsui_1721 0.18 +0.5 1,810,562 + Dsui_1721 0.18 +0.3 1,810,562 + Dsui_1721 0.18 -2.3 1,810,570 - Dsui_1721 0.18 -0.1 1,810,818 + Dsui_1721 0.31 -0.2 1,811,080 - -0.2 1,811,099 + Dsui_1721 0.46 +0.1 1,811,196 + Dsui_1721 0.51 -0.7 1,811,261 - Dsui_1721 0.55 +0.4 1,811,298 - +1.4 1,811,429 + Dsui_1721 0.64 +0.1 1,811,437 - Dsui_1721 0.64 +0.9 1,811,494 + Dsui_1721 0.67 -0.2 1,811,554 + Dsui_1721 0.70 +0.0 1,811,568 - Dsui_1721 0.71 +0.5 1,811,574 - Dsui_1721 0.71 -0.3 1,811,662 + Dsui_1721 0.76 -0.3 1,811,721 - Dsui_1721 0.79 -0.5 1,811,834 + Dsui_1721 0.85 +0.1 1,811,849 - Dsui_1721 0.86 +0.5 1,811,905 + Dsui_1721 0.89 -0.4 1,811,913 - Dsui_1721 0.89 -0.8 1,811,913 - Dsui_1721 0.89 -0.6 1,812,020 - +0.1 1,812,055 - -0.5 1,812,129 + -0.1 1,812,291 + +1.3 1,812,349 + -0.1 1,812,438 - Dsui_1722 0.13 +0.3 1,812,461 + Dsui_1722 0.15 -0.7 1,812,500 + Dsui_1722 0.18 +0.1 1,812,596 + Dsui_1722 0.26 +0.1 1,812,625 - Dsui_1722 0.29 -0.4 1,812,664 + Dsui_1722 0.32 -0.3 1,812,664 + Dsui_1722 0.32 -0.9 1,812,674 + Dsui_1722 0.33 -0.5 1,812,723 + Dsui_1722 0.38 +0.3 1,812,732 + Dsui_1722 0.38 +0.3 1,812,740 - Dsui_1722 0.39 -0.1 1,812,767 - Dsui_1722 0.41 -0.5 1,812,779 + Dsui_1722 0.42 -0.2 1,812,796 - Dsui_1722 0.44 -0.9 1,812,843 + Dsui_1722 0.48 -0.5 1,812,851 - Dsui_1722 0.49 +1.0 1,812,950 + Dsui_1722 0.57 -0.3 1,813,019 - Dsui_1722 0.64 -0.1 1,813,082 - Dsui_1722 0.69 +0.8
Or see this region's nucleotide sequence