Strain Fitness in Dechlorosoma suillum PS around Dsui_1580

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1579 and Dsui_1580 are separated by 186 nucleotidesDsui_1580 and Dsui_1581 are separated by 4 nucleotidesDsui_1581 and Dsui_1582 are separated by 186 nucleotides Dsui_1579: Dsui_1579 - ABC-type branched-chain amino acid transport system, periplasmic component, at 1,655,149 to 1,656,357 _1579 Dsui_1580: Dsui_1580 - PAS domain S-box, at 1,656,544 to 1,659,249 _1580 Dsui_1581: Dsui_1581 - response regulator, at 1,659,254 to 1,659,904 _1581 Dsui_1582: Dsui_1582 - Fe-S oxidoreductase, at 1,660,091 to 1,660,819 _1582 Position (kb) 1656 1657 1658 1659 1660Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1655.705 kb on + strandat 1655.722 kb on - strand, within Dsui_1579at 1655.732 kb on - strand, within Dsui_1579at 1655.916 kb on - strand, within Dsui_1579at 1656.019 kb on - strand, within Dsui_1579at 1656.058 kb on + strand, within Dsui_1579at 1656.158 kb on + strandat 1656.204 kb on + strand, within Dsui_1579at 1656.208 kb on + strandat 1656.279 kb on + strandat 1656.297 kb on - strandat 1656.359 kb on + strandat 1656.377 kb on + strandat 1656.442 kb on - strandat 1656.552 kb on - strandat 1656.552 kb on - strandat 1656.614 kb on - strandat 1656.625 kb on - strandat 1656.653 kb on + strandat 1656.841 kb on + strand, within Dsui_1580at 1656.891 kb on - strandat 1656.953 kb on + strand, within Dsui_1580at 1656.961 kb on - strandat 1656.961 kb on - strand, within Dsui_1580at 1656.981 kb on + strand, within Dsui_1580at 1657.049 kb on + strand, within Dsui_1580at 1657.219 kb on - strandat 1657.320 kb on + strand, within Dsui_1580at 1657.360 kb on - strandat 1657.519 kb on + strand, within Dsui_1580at 1657.719 kb on + strand, within Dsui_1580at 1657.719 kb on + strand, within Dsui_1580at 1657.727 kb on - strandat 1657.739 kb on + strand, within Dsui_1580at 1657.740 kb on - strand, within Dsui_1580at 1657.745 kb on - strandat 1657.799 kb on - strand, within Dsui_1580at 1657.932 kb on - strand, within Dsui_1580at 1657.935 kb on - strand, within Dsui_1580at 1658.150 kb on - strand, within Dsui_1580at 1658.185 kb on + strand, within Dsui_1580at 1658.211 kb on + strand, within Dsui_1580at 1658.211 kb on + strand, within Dsui_1580at 1658.290 kb on + strand, within Dsui_1580at 1658.308 kb on - strand, within Dsui_1580at 1658.496 kb on + strand, within Dsui_1580at 1658.648 kb on - strand, within Dsui_1580at 1658.827 kb on + strand, within Dsui_1580at 1658.874 kb on - strand, within Dsui_1580at 1658.927 kb on - strand, within Dsui_1580at 1659.009 kb on + strandat 1659.043 kb on - strandat 1659.072 kb on + strandat 1659.080 kb on - strandat 1659.113 kb on - strandat 1659.229 kb on + strandat 1659.263 kb on + strandat 1659.268 kb on - strandat 1659.291 kb on + strandat 1659.401 kb on - strandat 1659.590 kb on - strand, within Dsui_1581at 1659.602 kb on + strand, within Dsui_1581at 1659.610 kb on - strandat 1659.804 kb on + strand, within Dsui_1581at 1659.873 kb on - strandat 1659.907 kb on + strandat 1659.907 kb on - strandat 1660.143 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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1,655,705 + -0.6
1,655,722 - Dsui_1579 0.47 -0.0
1,655,732 - Dsui_1579 0.48 +0.7
1,655,916 - Dsui_1579 0.63 +0.6
1,656,019 - Dsui_1579 0.72 +0.9
1,656,058 + Dsui_1579 0.75 +0.0
1,656,158 + +1.9
1,656,204 + Dsui_1579 0.87 +0.6
1,656,208 + +1.0
1,656,279 + -0.0
1,656,297 - -0.1
1,656,359 + +2.8
1,656,377 + -0.8
1,656,442 - +1.9
1,656,552 - -2.1
1,656,552 - -1.6
1,656,614 - -0.6
1,656,625 - +0.9
1,656,653 + +0.1
1,656,841 + Dsui_1580 0.11 +1.5
1,656,891 - +0.4
1,656,953 + Dsui_1580 0.15 +1.0
1,656,961 - +0.8
1,656,961 - Dsui_1580 0.15 -0.3
1,656,981 + Dsui_1580 0.16 +0.6
1,657,049 + Dsui_1580 0.19 -0.6
1,657,219 - +0.4
1,657,320 + Dsui_1580 0.29 +0.4
1,657,360 - +0.4
1,657,519 + Dsui_1580 0.36 +1.1
1,657,719 + Dsui_1580 0.43 -2.4
1,657,719 + Dsui_1580 0.43 -0.2
1,657,727 - +1.4
1,657,739 + Dsui_1580 0.44 +1.2
1,657,740 - Dsui_1580 0.44 -2.0
1,657,745 - +0.4
1,657,799 - Dsui_1580 0.46 +1.7
1,657,932 - Dsui_1580 0.51 +1.8
1,657,935 - Dsui_1580 0.51 +0.5
1,658,150 - Dsui_1580 0.59 -0.1
1,658,185 + Dsui_1580 0.61 +1.1
1,658,211 + Dsui_1580 0.62 -1.2
1,658,211 + Dsui_1580 0.62 -1.9
1,658,290 + Dsui_1580 0.65 +0.2
1,658,308 - Dsui_1580 0.65 +0.2
1,658,496 + Dsui_1580 0.72 -1.7
1,658,648 - Dsui_1580 0.78 -1.3
1,658,827 + Dsui_1580 0.84 -1.4
1,658,874 - Dsui_1580 0.86 +1.4
1,658,927 - Dsui_1580 0.88 +0.8
1,659,009 + -0.4
1,659,043 - -0.1
1,659,072 + -1.0
1,659,080 - +0.9
1,659,113 - +0.4
1,659,229 + -0.6
1,659,263 + +1.6
1,659,268 - -4.2
1,659,291 + -2.2
1,659,401 - -0.2
1,659,590 - Dsui_1581 0.52 -4.3
1,659,602 + Dsui_1581 0.53 -4.0
1,659,610 - +0.4
1,659,804 + Dsui_1581 0.84 -2.9
1,659,873 - -0.4
1,659,907 + +0.7
1,659,907 - +0.3
1,660,143 - +0.5

Or see this region's nucleotide sequence