Strain Fitness in Dechlorosoma suillum PS around Dsui_1158

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1156 and Dsui_1157 are separated by 339 nucleotidesDsui_1157 and Dsui_1158 are separated by 86 nucleotidesDsui_1158 and Dsui_1159 are separated by 14 nucleotides Dsui_1156: Dsui_1156 - putative divalent heavy-metal cations transporter, at 1,212,405 to 1,213,310 _1156 Dsui_1157: Dsui_1157 - hypothetical protein, at 1,213,650 to 1,213,883 _1157 Dsui_1158: Dsui_1158 - hydrogenase expression/formation protein HypE, at 1,213,970 to 1,215,016 _1158 Dsui_1159: Dsui_1159 - hydrogenase expression/formation protein HypD, at 1,215,031 to 1,216,161 _1159 Position (kb) 1213 1214 1215 1216Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1212.971 kb on - strand, within Dsui_1156at 1213.320 kb on - strandat 1213.325 kb on - strandat 1213.336 kb on + strandat 1213.336 kb on + strandat 1213.432 kb on - strandat 1213.432 kb on - strandat 1213.438 kb on - strandat 1213.438 kb on - strandat 1213.491 kb on - strandat 1213.557 kb on + strandat 1213.565 kb on - strandat 1213.633 kb on + strandat 1213.638 kb on - strandat 1213.653 kb on - strandat 1213.664 kb on - strandat 1213.671 kb on + strandat 1213.701 kb on - strand, within Dsui_1157at 1213.805 kb on + strand, within Dsui_1157at 1213.813 kb on - strand, within Dsui_1157at 1214.062 kb on - strandat 1214.156 kb on + strand, within Dsui_1158at 1214.183 kb on + strand, within Dsui_1158at 1214.183 kb on + strandat 1214.306 kb on - strand, within Dsui_1158at 1214.308 kb on + strand, within Dsui_1158at 1214.352 kb on - strand, within Dsui_1158at 1214.357 kb on - strand, within Dsui_1158at 1214.357 kb on - strand, within Dsui_1158at 1214.571 kb on + strand, within Dsui_1158at 1214.571 kb on + strand, within Dsui_1158at 1214.571 kb on + strand, within Dsui_1158at 1214.571 kb on + strand, within Dsui_1158at 1214.579 kb on - strand, within Dsui_1158at 1214.579 kb on - strand, within Dsui_1158at 1214.579 kb on - strand, within Dsui_1158at 1214.683 kb on - strand, within Dsui_1158at 1214.855 kb on + strand, within Dsui_1158at 1214.863 kb on - strand, within Dsui_1158at 1214.960 kb on + strandat 1214.986 kb on + strandat 1215.042 kb on - strandat 1215.099 kb on + strandat 1215.134 kb on + strandat 1215.142 kb on - strandat 1215.177 kb on + strand, within Dsui_1159at 1215.190 kb on - strand, within Dsui_1159at 1215.279 kb on + strand, within Dsui_1159at 1215.313 kb on + strand, within Dsui_1159at 1215.380 kb on - strand, within Dsui_1159at 1215.497 kb on - strand, within Dsui_1159at 1215.550 kb on + strand, within Dsui_1159at 1215.653 kb on - strand, within Dsui_1159at 1215.680 kb on + strandat 1215.694 kb on - strand, within Dsui_1159at 1215.802 kb on + strandat 1215.810 kb on - strand, within Dsui_1159at 1215.881 kb on - strand, within Dsui_1159at 1215.900 kb on + strand, within Dsui_1159at 1215.901 kb on - strand, within Dsui_1159

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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1,212,971 - Dsui_1156 0.62 +0.9
1,213,320 - +1.1
1,213,325 - +0.6
1,213,336 + +0.3
1,213,336 + -0.1
1,213,432 - +0.9
1,213,432 - +2.4
1,213,438 - +2.0
1,213,438 - +0.6
1,213,491 - +1.4
1,213,557 + +0.2
1,213,565 - +0.9
1,213,633 + -4.6
1,213,638 - +0.2
1,213,653 - +1.4
1,213,664 - +0.4
1,213,671 + +0.6
1,213,701 - Dsui_1157 0.22 +0.0
1,213,805 + Dsui_1157 0.66 -0.3
1,213,813 - Dsui_1157 0.70 -1.7
1,214,062 - +0.5
1,214,156 + Dsui_1158 0.18 +1.4
1,214,183 + Dsui_1158 0.20 +1.0
1,214,183 + +0.4
1,214,306 - Dsui_1158 0.32 +0.4
1,214,308 + Dsui_1158 0.32 +0.8
1,214,352 - Dsui_1158 0.36 +0.8
1,214,357 - Dsui_1158 0.37 +1.4
1,214,357 - Dsui_1158 0.37 -0.0
1,214,571 + Dsui_1158 0.57 +0.2
1,214,571 + Dsui_1158 0.57 +1.0
1,214,571 + Dsui_1158 0.57 +1.0
1,214,571 + Dsui_1158 0.57 +1.0
1,214,579 - Dsui_1158 0.58 +0.5
1,214,579 - Dsui_1158 0.58 +0.4
1,214,579 - Dsui_1158 0.58 +0.9
1,214,683 - Dsui_1158 0.68 +0.1
1,214,855 + Dsui_1158 0.85 +0.6
1,214,863 - Dsui_1158 0.85 +0.2
1,214,960 + +1.4
1,214,986 + +0.5
1,215,042 - +0.3
1,215,099 + +0.6
1,215,134 + +0.3
1,215,142 - -0.3
1,215,177 + Dsui_1159 0.13 +0.2
1,215,190 - Dsui_1159 0.14 +1.4
1,215,279 + Dsui_1159 0.22 +0.5
1,215,313 + Dsui_1159 0.25 +0.9
1,215,380 - Dsui_1159 0.31 +0.4
1,215,497 - Dsui_1159 0.41 +0.5
1,215,550 + Dsui_1159 0.46 +0.5
1,215,653 - Dsui_1159 0.55 +1.0
1,215,680 + +0.4
1,215,694 - Dsui_1159 0.59 +0.7
1,215,802 + -0.6
1,215,810 - Dsui_1159 0.69 -0.4
1,215,881 - Dsui_1159 0.75 +0.7
1,215,900 + Dsui_1159 0.77 +1.2
1,215,901 - Dsui_1159 0.77 +0.6

Or see this region's nucleotide sequence