Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1027 and Dsui_1028 overlap by 11 nucleotides Dsui_1028 and Dsui_1029 are separated by 16 nucleotides Dsui_1029 and Dsui_1030 are separated by 78 nucleotides Dsui_1030 and Dsui_1031 are separated by 122 nucleotides
Dsui_1027: Dsui_1027 - RNA methyltransferase, RsmD family, at 1,060,172 to 1,060,780
_1027
Dsui_1028: Dsui_1028 - pantetheine-phosphate adenylyltransferase, at 1,060,770 to 1,061,267
_1028
Dsui_1029: Dsui_1029 - hypothetical protein, at 1,061,284 to 1,061,541
_1029
Dsui_1030: Dsui_1030 - dynamin family protein, at 1,061,620 to 1,063,575
_1030
Dsui_1031: Dsui_1031 - formamidopyrimidine-DNA glycosylase Fpg, at 1,063,698 to 1,064,525
_1031
Position (kb)
1061
1062
1063
1064 Strain fitness (log2 ratio)
-2
-1
0
1 at 1060.767 kb on - strand at 1060.767 kb on - strand at 1061.638 kb on - strand at 1061.717 kb on + strand at 1061.725 kb on - strand at 1061.764 kb on + strand at 1061.884 kb on - strand, within Dsui_1030 at 1061.947 kb on - strand, within Dsui_1030 at 1061.983 kb on - strand, within Dsui_1030 at 1062.008 kb on - strand, within Dsui_1030 at 1062.060 kb on + strand, within Dsui_1030 at 1062.060 kb on + strand, within Dsui_1030 at 1062.068 kb on - strand, within Dsui_1030 at 1062.085 kb on - strand, within Dsui_1030 at 1062.153 kb on + strand, within Dsui_1030 at 1062.161 kb on - strand, within Dsui_1030 at 1062.237 kb on + strand, within Dsui_1030 at 1062.299 kb on - strand, within Dsui_1030 at 1062.322 kb on - strand, within Dsui_1030 at 1062.325 kb on + strand, within Dsui_1030 at 1062.356 kb on + strand, within Dsui_1030 at 1062.356 kb on + strand, within Dsui_1030 at 1062.356 kb on + strand, within Dsui_1030 at 1062.364 kb on - strand, within Dsui_1030 at 1062.368 kb on + strand, within Dsui_1030 at 1062.389 kb on + strand, within Dsui_1030 at 1062.389 kb on + strand, within Dsui_1030 at 1062.402 kb on - strand, within Dsui_1030 at 1062.440 kb on - strand, within Dsui_1030 at 1062.497 kb on + strand at 1062.683 kb on - strand, within Dsui_1030 at 1062.725 kb on + strand, within Dsui_1030 at 1062.779 kb on + strand, within Dsui_1030 at 1062.820 kb on + strand, within Dsui_1030 at 1062.898 kb on + strand, within Dsui_1030 at 1062.938 kb on - strand, within Dsui_1030 at 1063.080 kb on - strand, within Dsui_1030 at 1063.130 kb on - strand, within Dsui_1030 at 1063.143 kb on + strand, within Dsui_1030 at 1063.318 kb on + strand, within Dsui_1030 at 1063.355 kb on + strand, within Dsui_1030 at 1063.365 kb on + strand, within Dsui_1030 at 1063.365 kb on + strand, within Dsui_1030 at 1063.365 kb on + strand, within Dsui_1030 at 1063.365 kb on + strand, within Dsui_1030 at 1063.373 kb on - strand, within Dsui_1030 at 1063.456 kb on + strand at 1063.481 kb on - strand at 1063.508 kb on + strand at 1063.555 kb on - strand at 1063.560 kb on - strand at 1063.742 kb on + strand at 1063.750 kb on - strand at 1063.815 kb on - strand, within Dsui_1031 at 1063.887 kb on + strand, within Dsui_1031 at 1064.017 kb on + strand, within Dsui_1031 at 1064.071 kb on + strand at 1064.089 kb on - strand at 1064.158 kb on - strand, within Dsui_1031 at 1064.184 kb on - strand, within Dsui_1031 at 1064.200 kb on - strand, within Dsui_1031 at 1064.228 kb on + strand, within Dsui_1031 at 1064.371 kb on - strand, within Dsui_1031 at 1064.407 kb on + strand, within Dsui_1031 at 1064.509 kb on - strand at 1064.562 kb on + strand at 1064.569 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 1,060,767 - -0.4 1,060,767 - +0.2 1,061,638 - +0.2 1,061,717 + +0.1 1,061,725 - +0.8 1,061,764 + -1.2 1,061,884 - Dsui_1030 0.13 +0.1 1,061,947 - Dsui_1030 0.17 +1.0 1,061,983 - Dsui_1030 0.19 +0.1 1,062,008 - Dsui_1030 0.20 +0.4 1,062,060 + Dsui_1030 0.22 +0.6 1,062,060 + Dsui_1030 0.22 +0.3 1,062,068 - Dsui_1030 0.23 +0.4 1,062,085 - Dsui_1030 0.24 +0.6 1,062,153 + Dsui_1030 0.27 +0.4 1,062,161 - Dsui_1030 0.28 +0.5 1,062,237 + Dsui_1030 0.32 +1.4 1,062,299 - Dsui_1030 0.35 +0.8 1,062,322 - Dsui_1030 0.36 +0.5 1,062,325 + Dsui_1030 0.36 +0.2 1,062,356 + Dsui_1030 0.38 +0.5 1,062,356 + Dsui_1030 0.38 +0.4 1,062,356 + Dsui_1030 0.38 -0.1 1,062,364 - Dsui_1030 0.38 -0.1 1,062,368 + Dsui_1030 0.38 +0.2 1,062,389 + Dsui_1030 0.39 +0.4 1,062,389 + Dsui_1030 0.39 +0.1 1,062,402 - Dsui_1030 0.40 +0.3 1,062,440 - Dsui_1030 0.42 +0.9 1,062,497 + -0.8 1,062,683 - Dsui_1030 0.54 +0.3 1,062,725 + Dsui_1030 0.56 +0.4 1,062,779 + Dsui_1030 0.59 +0.6 1,062,820 + Dsui_1030 0.61 +0.5 1,062,898 + Dsui_1030 0.65 -0.3 1,062,938 - Dsui_1030 0.67 -2.7 1,063,080 - Dsui_1030 0.75 +0.6 1,063,130 - Dsui_1030 0.77 +0.4 1,063,143 + Dsui_1030 0.78 +1.5 1,063,318 + Dsui_1030 0.87 +0.4 1,063,355 + Dsui_1030 0.89 +0.7 1,063,365 + Dsui_1030 0.89 -0.8 1,063,365 + Dsui_1030 0.89 +0.3 1,063,365 + Dsui_1030 0.89 -0.4 1,063,365 + Dsui_1030 0.89 +0.4 1,063,373 - Dsui_1030 0.90 +0.6 1,063,456 + +0.3 1,063,481 - +0.3 1,063,508 + -0.4 1,063,555 - +0.7 1,063,560 - +0.6 1,063,742 + -0.6 1,063,750 - +0.9 1,063,815 - Dsui_1031 0.14 -0.2 1,063,887 + Dsui_1031 0.23 -0.5 1,064,017 + Dsui_1031 0.39 -0.6 1,064,071 + +1.4 1,064,089 - +1.0 1,064,158 - Dsui_1031 0.56 -0.7 1,064,184 - Dsui_1031 0.59 -0.0 1,064,200 - Dsui_1031 0.61 +0.2 1,064,228 + Dsui_1031 0.64 -2.1 1,064,371 - Dsui_1031 0.81 -0.9 1,064,407 + Dsui_1031 0.86 +0.4 1,064,509 - +0.2 1,064,562 + +1.7 1,064,569 - +1.2
Or see this region's nucleotide sequence