Strain Fitness in Dechlorosoma suillum PS around Dsui_0932

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0930 and Dsui_0931 are separated by 168 nucleotidesDsui_0931 and Dsui_0932 are separated by 15 nucleotidesDsui_0932 and Dsui_0933 are separated by 196 nucleotides Dsui_0930: Dsui_0930 - transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains, at 958,448 to 959,797 _0930 Dsui_0931: Dsui_0931 - thiol-disulfide isomerase-like thioredoxin, at 959,966 to 960,472 _0931 Dsui_0932: Dsui_0932 - hypothetical protein, at 960,488 to 961,192 _0932 Dsui_0933: Dsui_0933 - DNA/RNA helicase, superfamily I, at 961,389 to 963,398 _0933 Position (kb) 960 961 962Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 959.502 kb on + strand, within Dsui_0930at 959.533 kb on + strand, within Dsui_0930at 959.537 kb on + strand, within Dsui_0930at 959.568 kb on + strand, within Dsui_0930at 959.620 kb on - strand, within Dsui_0930at 959.695 kb on - strandat 959.700 kb on - strandat 959.747 kb on - strandat 959.747 kb on - strandat 959.747 kb on - strandat 959.784 kb on - strandat 959.819 kb on + strandat 959.835 kb on + strandat 959.858 kb on + strandat 959.858 kb on + strandat 959.866 kb on - strandat 959.868 kb on + strandat 959.944 kb on - strandat 959.950 kb on + strandat 959.950 kb on + strandat 959.972 kb on - strandat 960.035 kb on + strand, within Dsui_0931at 960.090 kb on - strand, within Dsui_0931at 960.090 kb on - strand, within Dsui_0931at 960.100 kb on - strand, within Dsui_0931at 960.124 kb on + strand, within Dsui_0931at 960.169 kb on - strand, within Dsui_0931at 960.196 kb on - strand, within Dsui_0931at 960.213 kb on - strand, within Dsui_0931at 960.273 kb on - strand, within Dsui_0931at 960.349 kb on - strand, within Dsui_0931at 960.445 kb on + strandat 960.445 kb on + strandat 960.448 kb on - strandat 960.453 kb on - strandat 960.453 kb on - strandat 960.575 kb on + strand, within Dsui_0932at 960.597 kb on - strand, within Dsui_0932at 960.663 kb on - strand, within Dsui_0932at 960.711 kb on + strand, within Dsui_0932at 960.870 kb on - strand, within Dsui_0932at 961.001 kb on - strand, within Dsui_0932at 961.032 kb on - strandat 961.087 kb on - strand, within Dsui_0932at 961.089 kb on + strand, within Dsui_0932at 961.089 kb on + strand, within Dsui_0932at 961.089 kb on + strand, within Dsui_0932at 961.097 kb on - strand, within Dsui_0932at 961.097 kb on - strand, within Dsui_0932at 961.122 kb on - strandat 961.177 kb on - strandat 961.346 kb on - strandat 961.404 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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959,502 + Dsui_0930 0.78 -0.1
959,533 + Dsui_0930 0.80 -1.0
959,537 + Dsui_0930 0.81 +0.1
959,568 + Dsui_0930 0.83 -0.2
959,620 - Dsui_0930 0.87 +0.5
959,695 - +0.2
959,700 - -0.0
959,747 - +0.5
959,747 - -1.8
959,747 - +0.1
959,784 - +1.7
959,819 + -1.4
959,835 + -0.1
959,858 + +0.1
959,858 + +0.8
959,866 - +1.8
959,868 + +0.1
959,944 - -0.3
959,950 + +0.2
959,950 + -0.2
959,972 - +0.3
960,035 + Dsui_0931 0.14 +0.3
960,090 - Dsui_0931 0.24 -0.2
960,090 - Dsui_0931 0.24 -0.1
960,100 - Dsui_0931 0.26 -1.6
960,124 + Dsui_0931 0.31 +1.1
960,169 - Dsui_0931 0.40 +0.4
960,196 - Dsui_0931 0.45 +0.9
960,213 - Dsui_0931 0.49 +1.4
960,273 - Dsui_0931 0.61 +0.2
960,349 - Dsui_0931 0.76 +0.6
960,445 + +1.0
960,445 + +0.3
960,448 - -0.2
960,453 - -0.1
960,453 - +0.2
960,575 + Dsui_0932 0.12 -3.3
960,597 - Dsui_0932 0.15 +0.1
960,663 - Dsui_0932 0.25 -0.6
960,711 + Dsui_0932 0.32 +0.3
960,870 - Dsui_0932 0.54 -0.6
961,001 - Dsui_0932 0.73 +0.7
961,032 - +0.4
961,087 - Dsui_0932 0.85 +0.7
961,089 + Dsui_0932 0.85 -0.3
961,089 + Dsui_0932 0.85 -1.2
961,089 + Dsui_0932 0.85 +0.1
961,097 - Dsui_0932 0.86 -0.0
961,097 - Dsui_0932 0.86 +0.2
961,122 - +0.3
961,177 - -0.3
961,346 - -0.6
961,404 + -0.1

Or see this region's nucleotide sequence