Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0522 and Dsui_0523 overlap by 1 nucleotides Dsui_0523 and Dsui_0524 are separated by 244 nucleotides Dsui_0524 and Dsui_0525 overlap by 11 nucleotides Dsui_0525 and Dsui_0527 are separated by 288 nucleotides
Dsui_0522: Dsui_0522 - SSS sodium solute transporter, at 529,167 to 530,840
_0522
Dsui_0523: Dsui_0523 - putative membrane protein, at 530,840 to 531,160
_0523
Dsui_0524: Dsui_0524 - putative permease, at 531,405 to 532,208
_0524
Dsui_0525: Dsui_0525 - hypothetical protein, at 532,198 to 532,668
_0525
Dsui_0527: Dsui_0527 - hypothetical protein, at 532,957 to 533,286
_0527
Position (kb) 531
532
533 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 530.441 kb on - strand, within Dsui_0522 at 530.537 kb on - strand, within Dsui_0522 at 530.543 kb on + strand, within Dsui_0522 at 530.550 kb on + strand, within Dsui_0522 at 530.635 kb on + strand, within Dsui_0522 at 530.635 kb on + strand, within Dsui_0522 at 530.685 kb on + strand at 530.813 kb on + strand at 530.862 kb on + strand at 530.944 kb on + strand, within Dsui_0523 at 530.991 kb on + strand, within Dsui_0523 at 531.077 kb on + strand, within Dsui_0523 at 531.155 kb on + strand at 531.163 kb on - strand at 531.165 kb on - strand at 531.168 kb on - strand at 531.210 kb on + strand at 531.217 kb on + strand at 531.217 kb on + strand at 531.222 kb on + strand at 531.224 kb on - strand at 531.225 kb on - strand at 531.230 kb on - strand at 531.260 kb on + strand at 531.329 kb on + strand at 531.329 kb on + strand at 531.492 kb on + strand, within Dsui_0524 at 531.546 kb on - strand, within Dsui_0524 at 531.613 kb on - strand, within Dsui_0524 at 531.626 kb on - strand, within Dsui_0524 at 531.655 kb on - strand, within Dsui_0524 at 531.703 kb on + strand, within Dsui_0524 at 531.704 kb on + strand, within Dsui_0524 at 531.842 kb on + strand, within Dsui_0524 at 531.845 kb on - strand, within Dsui_0524 at 531.925 kb on + strand, within Dsui_0524 at 531.928 kb on - strand, within Dsui_0524 at 531.933 kb on - strand, within Dsui_0524 at 531.952 kb on - strand, within Dsui_0524 at 531.986 kb on + strand, within Dsui_0524 at 532.037 kb on - strand, within Dsui_0524 at 532.077 kb on - strand, within Dsui_0524 at 532.167 kb on + strand at 532.173 kb on + strand at 532.175 kb on - strand at 532.185 kb on - strand at 532.213 kb on - strand at 532.218 kb on + strand at 532.218 kb on - strand at 532.248 kb on + strand, within Dsui_0525 at 532.298 kb on + strand, within Dsui_0525 at 532.312 kb on + strand, within Dsui_0525 at 532.371 kb on + strand, within Dsui_0525 at 532.371 kb on + strand, within Dsui_0525 at 532.429 kb on + strand, within Dsui_0525 at 532.453 kb on + strand, within Dsui_0525 at 532.646 kb on + strand at 532.658 kb on + strand at 532.678 kb on - strand at 532.686 kb on - strand at 532.736 kb on + strand at 532.844 kb on + strand at 532.978 kb on + strand at 533.028 kb on + strand, within Dsui_0527 at 533.068 kb on + strand, within Dsui_0527 at 533.068 kb on + strand, within Dsui_0527 at 533.147 kb on + strand, within Dsui_0527 at 533.152 kb on + strand, within Dsui_0527 at 533.155 kb on - strand, within Dsui_0527
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 530,441 - Dsui_0522 0.76 +0.1 530,537 - Dsui_0522 0.82 -0.2 530,543 + Dsui_0522 0.82 -0.7 530,550 + Dsui_0522 0.83 -0.1 530,635 + Dsui_0522 0.88 +0.5 530,635 + Dsui_0522 0.88 -0.6 530,685 + +0.1 530,813 + -0.7 530,862 + +0.1 530,944 + Dsui_0523 0.32 -0.3 530,991 + Dsui_0523 0.47 +1.0 531,077 + Dsui_0523 0.74 -0.5 531,155 + +1.0 531,163 - -0.1 531,165 - -0.2 531,168 - -0.4 531,210 + +1.9 531,217 + +0.4 531,217 + +0.5 531,222 + +0.1 531,224 - -0.4 531,225 - -1.0 531,230 - -0.9 531,260 + -1.6 531,329 + -0.2 531,329 + -1.0 531,492 + Dsui_0524 0.11 -0.1 531,546 - Dsui_0524 0.18 +0.3 531,613 - Dsui_0524 0.26 +0.1 531,626 - Dsui_0524 0.27 -0.1 531,655 - Dsui_0524 0.31 -0.9 531,703 + Dsui_0524 0.37 +0.2 531,704 + Dsui_0524 0.37 +0.3 531,842 + Dsui_0524 0.54 -0.1 531,845 - Dsui_0524 0.55 -0.0 531,925 + Dsui_0524 0.65 +0.1 531,928 - Dsui_0524 0.65 -0.0 531,933 - Dsui_0524 0.66 +0.3 531,952 - Dsui_0524 0.68 +0.2 531,986 + Dsui_0524 0.72 +0.4 532,037 - Dsui_0524 0.79 +0.1 532,077 - Dsui_0524 0.84 +0.4 532,167 + -0.4 532,173 + -0.3 532,175 - +0.0 532,185 - +0.1 532,213 - +0.2 532,218 + -0.4 532,218 - +0.1 532,248 + Dsui_0525 0.11 -0.2 532,298 + Dsui_0525 0.21 +0.4 532,312 + Dsui_0525 0.24 +0.0 532,371 + Dsui_0525 0.37 -0.7 532,371 + Dsui_0525 0.37 +0.7 532,429 + Dsui_0525 0.49 +0.0 532,453 + Dsui_0525 0.54 +0.2 532,646 + -1.9 532,658 + +0.8 532,678 - +0.4 532,686 - -0.2 532,736 + -0.7 532,844 + -1.6 532,978 + -1.7 533,028 + Dsui_0527 0.22 -0.2 533,068 + Dsui_0527 0.34 -3.0 533,068 + Dsui_0527 0.34 -2.2 533,147 + Dsui_0527 0.58 -0.4 533,152 + Dsui_0527 0.59 -0.8 533,155 - Dsui_0527 0.60 -1.4
Or see this region's nucleotide sequence