Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0418 and Dsui_0419 overlap by 8 nucleotides Dsui_0419 and Dsui_0420 are separated by 141 nucleotides Dsui_0420 and Dsui_0421 are separated by 58 nucleotides
Dsui_0418: Dsui_0418 - putative Na+-dependent transporter, at 419,564 to 420,538
_0418
Dsui_0419: Dsui_0419 - hypothetical protein, at 420,531 to 421,073
_0419
Dsui_0420: Dsui_0420 - transcriptional regulator with HTH domain and aminotransferase domain, at 421,215 to 422,624
_0420
Dsui_0421: Dsui_0421 - carbonic anhydrase, at 422,683 to 424,119
_0421
Position (kb)
421
422
423 Strain fitness (log2 ratio)
-1
0
1
2 at 420.222 kb on + strand at 420.270 kb on + strand, within Dsui_0418 at 420.278 kb on - strand, within Dsui_0418 at 420.283 kb on - strand, within Dsui_0418 at 420.508 kb on - strand at 420.516 kb on + strand at 420.548 kb on + strand at 420.760 kb on - strand, within Dsui_0419 at 420.812 kb on + strand at 420.972 kb on - strand, within Dsui_0419 at 421.013 kb on - strand, within Dsui_0419 at 421.048 kb on + strand at 421.055 kb on - strand at 421.056 kb on - strand at 421.068 kb on + strand at 421.068 kb on + strand at 421.076 kb on - strand at 421.090 kb on - strand at 421.178 kb on - strand at 421.196 kb on - strand at 421.216 kb on + strand at 421.244 kb on + strand at 421.251 kb on - strand at 421.671 kb on + strand, within Dsui_0420 at 421.671 kb on + strand, within Dsui_0420 at 421.671 kb on + strand, within Dsui_0420 at 421.671 kb on + strand, within Dsui_0420 at 421.674 kb on - strand, within Dsui_0420 at 421.679 kb on - strand at 421.729 kb on - strand at 421.777 kb on + strand, within Dsui_0420 at 421.851 kb on - strand, within Dsui_0420 at 421.876 kb on + strand, within Dsui_0420 at 421.958 kb on - strand at 421.958 kb on - strand, within Dsui_0420 at 422.117 kb on + strand, within Dsui_0420 at 422.122 kb on + strand, within Dsui_0420 at 422.130 kb on - strand, within Dsui_0420 at 422.182 kb on + strand, within Dsui_0420 at 422.234 kb on - strand, within Dsui_0420 at 422.615 kb on - strand at 422.616 kb on - strand at 422.616 kb on - strand at 422.779 kb on + strand at 422.963 kb on - strand, within Dsui_0421 at 422.964 kb on - strand at 423.122 kb on - strand, within Dsui_0421 at 423.331 kb on + strand at 423.369 kb on + strand, within Dsui_0421 at 423.378 kb on + strand, within Dsui_0421 at 423.379 kb on + strand, within Dsui_0421 at 423.463 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 420,222 + +1.4 420,270 + Dsui_0418 0.72 +1.2 420,278 - Dsui_0418 0.73 +0.4 420,283 - Dsui_0418 0.74 +0.0 420,508 - -0.2 420,516 + -1.4 420,548 + +0.0 420,760 - Dsui_0419 0.42 -0.6 420,812 + +1.4 420,972 - Dsui_0419 0.81 -1.0 421,013 - Dsui_0419 0.89 +0.6 421,048 + -0.2 421,055 - +2.0 421,056 - -0.2 421,068 + -0.4 421,068 + -1.4 421,076 - +0.4 421,090 - +0.6 421,178 - +1.4 421,196 - +0.4 421,216 + -0.6 421,244 + +0.5 421,251 - +0.1 421,671 + Dsui_0420 0.32 +1.6 421,671 + Dsui_0420 0.32 +0.7 421,671 + Dsui_0420 0.32 -0.2 421,671 + Dsui_0420 0.32 +0.8 421,674 - Dsui_0420 0.33 -0.3 421,679 - -1.4 421,729 - -0.2 421,777 + Dsui_0420 0.40 +0.4 421,851 - Dsui_0420 0.45 -0.5 421,876 + Dsui_0420 0.47 +0.2 421,958 - +1.7 421,958 - Dsui_0420 0.53 +0.3 422,117 + Dsui_0420 0.64 +0.5 422,122 + Dsui_0420 0.64 +0.4 422,130 - Dsui_0420 0.65 +0.0 422,182 + Dsui_0420 0.69 +1.1 422,234 - Dsui_0420 0.72 +0.4 422,615 - +1.0 422,616 - -0.6 422,616 - +0.4 422,779 + -0.5 422,963 - Dsui_0421 0.19 -0.2 422,964 - +1.0 423,122 - Dsui_0421 0.31 +0.9 423,331 + -0.2 423,369 + Dsui_0421 0.48 -0.9 423,378 + Dsui_0421 0.48 -0.8 423,379 + Dsui_0421 0.48 -0.1 423,463 + -0.2
Or see this region's nucleotide sequence