Strain Fitness in Shewanella amazonensis SB2B around Sama_3300

Experiment: NAG

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG
3,925,697	+		Sama_3299	0.18	-1.4
3,925,742	+		Sama_3299	0.22	-3.2
3,925,742	+		Sama_3299	0.22	-4.2
3,925,742	+		Sama_3299	0.22	-3.8
3,925,743	-		Sama_3299	0.22	-1.1
3,925,804	+		Sama_3299	0.28	-0.4
3,925,804	+		Sama_3299	0.28	-1.1
3,925,804	+		Sama_3299	0.28	-3.4
3,925,805	-		Sama_3299	0.28	-1.6
3,925,805	-		Sama_3299	0.28	-3.2
3,925,805	-		Sama_3299	0.28	-4.8
3,925,805	-		Sama_3299	0.28	-1.6
3,925,805	-		Sama_3299	0.28	-1.6
3,925,840	+		Sama_3299	0.31	-3.7
3,925,841	-		Sama_3299	0.31	-1.1
3,925,858	+		Sama_3299	0.33	-2.6
3,925,899	+		Sama_3299	0.37	-3.4
3,925,899	+		Sama_3299	0.37	-2.5
3,925,899	+		Sama_3299	0.37	-2.5
3,925,899	+		Sama_3299	0.37	-1.9
3,925,899	+		Sama_3299	0.37	-1.4
3,925,899	+		Sama_3299	0.37	-3.7
3,925,899	+		Sama_3299	0.37	-1.6
3,925,900	-		Sama_3299	0.37	-4.1
3,925,900	-		Sama_3299	0.37	-4.8
3,925,920	+		Sama_3299	0.39	-2.4
3,925,920	+		Sama_3299	0.39	-3.1
3,925,920	+		Sama_3299	0.39	-2.8
3,925,920	+		Sama_3299	0.39	-3.4
3,925,921	-		Sama_3299	0.39	-1.9
3,925,980	+		Sama_3299	0.44	-4.3
3,925,980	+		Sama_3299	0.44	-2.1
3,925,980	+		Sama_3299	0.44	-2.5
3,925,980	+		Sama_3299	0.44	-2.2
3,925,980	+		Sama_3299	0.44	-4.7
3,925,980	+		Sama_3299	0.44	-1.4
3,925,980	+		Sama_3299	0.44	-2.9
3,925,981	-		Sama_3299	0.44	-2.9
3,925,981	-		Sama_3299	0.44	-1.4
3,925,981	-		Sama_3299	0.44	-2.5
3,925,981	-		Sama_3299	0.44	-2.0
3,925,981	-		Sama_3299	0.44	-2.6
3,926,076	+		Sama_3299	0.53	-1.1
3,926,076	+		Sama_3299	0.53	-0.9
3,926,076	+		Sama_3299	0.53	-1.6
3,926,076	+		Sama_3299	0.53	-0.6
3,926,077	-		Sama_3299	0.53	-4.5
3,926,077	-		Sama_3299	0.53	-1.6
3,926,079	+		Sama_3299	0.53	-3.3
3,926,079	+		Sama_3299	0.53	-1.9
3,926,079	+		Sama_3299	0.53	-2.0
3,926,079	+		Sama_3299	0.53	-3.8
3,926,079	+		Sama_3299	0.53	-3.1
3,926,080	-		Sama_3299	0.53	-3.4
3,926,080	-		Sama_3299	0.53	-2.1
3,926,080	-		Sama_3299	0.53	-3.8
3,926,080	-		Sama_3299	0.53	-2.6
3,926,080	-		Sama_3299	0.53	-2.4
3,926,099	+		Sama_3299	0.55	-2.2
3,926,100	-		Sama_3299	0.55	-4.0
3,926,115	+		Sama_3299	0.57	-1.9
3,926,115	+		Sama_3299	0.57	-3.2
3,926,116	-		Sama_3299	0.57	-2.8
3,926,116	-		Sama_3299	0.57	-2.1
3,926,116	-		Sama_3299	0.57	-5.1
3,926,116	-		Sama_3299	0.57	-1.4
3,926,116	-		Sama_3299	0.57	-2.1
3,926,159	+		Sama_3299	0.61	-3.1
3,926,159	+		Sama_3299	0.61	-2.9
3,926,159	+		Sama_3299	0.61	-1.9
3,926,159	+		Sama_3299	0.61	-3.8
3,926,159	+		Sama_3299	0.61	-1.2
3,926,159	+		Sama_3299	0.61	-3.1
3,926,160	-		Sama_3299	0.61	-3.8
3,926,160	-		Sama_3299	0.61	-2.5
3,926,160	-		Sama_3299	0.61	-1.8
3,926,173	+		Sama_3299	0.62	-2.7
3,926,175	+		Sama_3299	0.62	-0.1
3,926,175	+		Sama_3299	0.62	-1.9
3,926,175	+		Sama_3299	0.62	-2.9
3,926,175	+		Sama_3299	0.62	-3.5
3,926,175	+		Sama_3299	0.62	-3.1
3,926,175	+		Sama_3299	0.62	-4.3
3,926,176	-		Sama_3299	0.62	-3.9
3,926,176	-		Sama_3299	0.62	-1.9
3,926,176	-		Sama_3299	0.62	-3.6
3,926,176	-		Sama_3299	0.62	-2.5
3,926,176	-		Sama_3299	0.62	-3.3
3,926,176	-		Sama_3299	0.62	-2.8
3,926,272	+		Sama_3299	0.71	-1.1
3,926,273	-		Sama_3299	0.71	-0.1
3,926,332	-		Sama_3299	0.77	-2.3
3,926,353	+		Sama_3299	0.79	-3.5
3,926,353	+		Sama_3299	0.79	-3.3
3,926,353	+		Sama_3299	0.79	-2.8
3,926,353	+		Sama_3299	0.79	-2.4
3,926,353	+		Sama_3299	0.79	-2.5
3,926,353	+		Sama_3299	0.79	-0.6
3,926,353	+		Sama_3299	0.79	-4.4
3,926,354	-		Sama_3299	0.79	-3.9
3,926,354	-		Sama_3299	0.79	-3.6
3,926,354	-		Sama_3299	0.79	-1.5
3,926,377	+		Sama_3299	0.81	-2.8
3,926,388	+		Sama_3299	0.82	-2.3
3,926,388	+		Sama_3299	0.82	-2.0
3,926,469	+		Sama_3299	0.89	-3.2
3,926,470	-		Sama_3299	0.89	-4.6
3,926,470	-		Sama_3299	0.89	-2.5
3,926,470	-		Sama_3299	0.89	-2.5
3,926,470	-		Sama_3299	0.89	-4.3
3,926,479	+				-2.9
3,926,480	-				-1.9
3,926,480	-				-3.0
3,926,480	-				-0.6
3,926,480	-				-2.0
3,926,480	-				-2.4
3,926,485	+				-2.5
3,926,485	+				-1.6
3,926,485	+				-2.1
3,926,485	+				-2.8
3,926,485	+				-1.4
3,926,485	+				-2.2
3,926,485	+				-2.8
3,926,485	+				-2.8
3,926,485	+				-2.5
3,926,485	+				-1.1
3,926,485	+				-3.1
3,926,486	-				-3.7
3,926,486	-				-2.2
3,926,486	-				-2.1
3,926,486	-				-2.3
3,926,486	-				-2.5
3,926,486	-				-1.9
3,926,486	-				-2.4
3,926,486	-				-2.4
3,926,486	-				-1.1
3,926,486	-				-2.6
3,926,486	-				-4.1
3,926,486	-				-0.1
3,926,486	-				-3.2
3,926,486	-				-3.2
3,926,486	-				-3.1
3,926,497	+				-1.1
3,926,497	+				-0.1
3,926,497	+				-3.1
3,926,498	-				-3.6
3,926,498	-				-3.2
3,926,498	-				-3.1
3,926,498	-				-0.1
3,926,498	-				-5.1
3,926,565	-				-2.1
3,926,565	-				-3.4
3,926,571	+				-2.1
3,926,571	+				-4.2
3,926,572	-				-2.8
3,926,572	-				-2.6
3,926,572	-				-3.2
3,926,576	+				-2.0
3,926,576	+				-5.3
3,926,576	+				-2.4
3,926,576	+				-4.2
3,926,576	+				-2.6
3,926,576	+				-3.2
3,926,576	+				-2.6
3,926,576	+				-2.5
3,926,576	+				-3.6
3,926,576	+				-2.6
3,926,577	-				-4.3
3,926,577	-				-1.2
3,926,577	-				-2.4
3,926,577	-				-4.0
3,926,577	-				-1.6
3,926,577	-				-3.3
3,926,577	-				-1.4
3,926,577	-				-2.0
3,926,577	-				-3.3
3,926,577	-				-1.6
3,926,578	+				-0.6
3,926,578	+				-2.9
3,926,589	+				-3.6
3,926,590	-				-1.3
3,926,617	+				-3.9
3,926,618	-				-0.1
3,926,633	+				-2.5
3,926,633	+				-3.0
3,926,634	-				-1.8
3,926,642	+				+1.1
3,926,643	-				+0.3
3,926,673	+				-3.2
3,926,673	+				+0.2
3,926,791	+				+0.4
3,926,791	+				+1.3
3,926,846	+		Sama_3300	0.13	-0.7
3,926,846	+		Sama_3300	0.13	-0.1
3,926,979	+		Sama_3300	0.24	+0.8
3,926,980	-		Sama_3300	0.25	+1.4
3,926,980	-		Sama_3300	0.25	-0.6
3,926,980	-		Sama_3300	0.25	+2.5
3,926,980	-		Sama_3300	0.25	-0.1
3,926,980	-		Sama_3300	0.25	-0.2
3,927,017	+		Sama_3300	0.28	+0.3
3,927,017	+		Sama_3300	0.28	+1.8
3,927,017	+		Sama_3300	0.28	+0.5
3,927,019	-		Sama_3300	0.28	-0.3
3,927,065	+		Sama_3300	0.32	-2.1
3,927,065	+		Sama_3300	0.32	-0.1
3,927,065	+		Sama_3300	0.32	+1.1
3,927,065	+		Sama_3300	0.32	-0.5
3,927,066	-		Sama_3300	0.32	+1.7
3,927,066	-		Sama_3300	0.32	-1.4
3,927,066	-		Sama_3300	0.32	-0.5
3,927,066	-		Sama_3300	0.32	-0.8
3,927,120	-		Sama_3300	0.36	+3.9
3,927,120	-		Sama_3300	0.36	-1.6
3,927,127	+		Sama_3300	0.37	-0.9
3,927,127	+		Sama_3300	0.37	+0.1
3,927,128	-		Sama_3300	0.37	+0.6
3,927,128	-		Sama_3300	0.37	-0.3
3,927,233	+		Sama_3300	0.46	+0.8
3,927,234	-		Sama_3300	0.46	+0.4
3,927,261	+		Sama_3300	0.49	+0.1
3,927,261	+		Sama_3300	0.49	+0.6
3,927,261	+		Sama_3300	0.49	+0.9
3,927,262	-		Sama_3300	0.49	-0.9
3,927,295	+		Sama_3300	0.51	-0.1
3,927,295	+		Sama_3300	0.51	+1.2
3,927,296	-		Sama_3300	0.52	+0.3
3,927,301	+		Sama_3300	0.52	+0.9
3,927,318	+		Sama_3300	0.53	+0.3
3,927,318	+		Sama_3300	0.53	+0.6
3,927,318	+		Sama_3300	0.53	+0.4
3,927,318	+		Sama_3300	0.53	+0.5
3,927,318	+		Sama_3300	0.53	+0.4
3,927,319	-		Sama_3300	0.54	-0.4
3,927,319	-		Sama_3300	0.54	+1.3
3,927,319	-		Sama_3300	0.54	-1.6
3,927,319	-		Sama_3300	0.54	+0.4
3,927,400	+		Sama_3300	0.60	+0.1
3,927,400	+		Sama_3300	0.60	-0.1
3,927,400	+		Sama_3300	0.60	+0.3
3,927,401	-		Sama_3300	0.61	-0.1
3,927,401	-		Sama_3300	0.61	-0.4
3,927,403	+		Sama_3300	0.61	-0.1
3,927,403	+		Sama_3300	0.61	+0.5
3,927,404	-		Sama_3300	0.61	-0.8
3,927,404	-		Sama_3300	0.61	+0.8
3,927,404	-		Sama_3300	0.61	-1.6
3,927,404	-		Sama_3300	0.61	-0.3
3,927,405	-		Sama_3300	0.61	+0.9
3,927,579	+		Sama_3300	0.76	+1.2
3,927,579	+		Sama_3300	0.76	-1.5
3,927,580	-		Sama_3300	0.76	+1.0
3,927,661	+		Sama_3300	0.83	-1.9
3,927,661	+		Sama_3300	0.83	+0.5
3,927,661	+		Sama_3300	0.83	+0.3
3,927,661	+		Sama_3300	0.83	-0.6
3,927,661	+		Sama_3300	0.83	-0.1
3,927,662	-		Sama_3300	0.83	-0.6
3,927,662	-		Sama_3300	0.83	-0.6
3,927,662	-		Sama_3300	0.83	-0.3
3,927,662	-		Sama_3300	0.83	-0.4
3,927,750	+				+0.7
3,927,751	-				-0.0
3,927,751	-				-2.3
3,927,861	-				+0.4
3,927,883	+				+2.0
3,927,884	-				+0.1
3,927,890	+				-0.1
3,927,891	-				-0.4
3,927,898	-				+0.5
3,928,005	+		Sama_3301	0.13	-0.9
3,928,005	+		Sama_3301	0.13	+0.3
3,928,005	+		Sama_3301	0.13	+0.7
3,928,006	-		Sama_3301	0.13	+0.5
3,928,006	-		Sama_3301	0.13	+0.4
3,928,006	-		Sama_3301	0.13	-0.1
3,928,006	-		Sama_3301	0.13	+0.4
3,928,006	-		Sama_3301	0.13	-0.1
3,928,032	+		Sama_3301	0.16	-1.3
3,928,032	+		Sama_3301	0.16	-0.4
3,928,032	+		Sama_3301	0.16	+0.4
3,928,032	+		Sama_3301	0.16	-0.3
3,928,032	+		Sama_3301	0.16	+1.5
3,928,033	-		Sama_3301	0.16	-1.0
3,928,046	-		Sama_3301	0.17	-0.2
3,928,070	+		Sama_3301	0.20	+0.9
3,928,070	+		Sama_3301	0.20	+0.4
3,928,070	+		Sama_3301	0.20	+0.1
3,928,070	+		Sama_3301	0.20	-1.3
3,928,070	+		Sama_3301	0.20	+0.9
3,928,070	+		Sama_3301	0.20	-0.1
3,928,071	-		Sama_3301	0.20	+0.8
3,928,071	-		Sama_3301	0.20	+2.6
3,928,071	-		Sama_3301	0.20	+0.5
3,928,071	-		Sama_3301	0.20	-1.6
3,928,080	+		Sama_3301	0.21	+0.4
3,928,081	-		Sama_3301	0.22	-0.1
3,928,092	+		Sama_3301	0.23	+0.4
3,928,092	+		Sama_3301	0.23	-0.4
3,928,092	+		Sama_3301	0.23	+1.4
3,928,093	-		Sama_3301	0.23	-0.6
3,928,093	-		Sama_3301	0.23	-0.7
3,928,093	-		Sama_3301	0.23	-0.9
3,928,093	-		Sama_3301	0.23	+0.8
3,928,113	+		Sama_3301	0.25	-1.2
3,928,114	-		Sama_3301	0.25	+0.8
3,928,114	-		Sama_3301	0.25	+0.4
3,928,158	+		Sama_3301	0.31	-0.8
3,928,158	+		Sama_3301	0.31	-0.5
3,928,158	+		Sama_3301	0.31	-0.4
3,928,158	+		Sama_3301	0.31	+0.5
3,928,159	-		Sama_3301	0.31	+1.5
3,928,159	-		Sama_3301	0.31	+0.8
3,928,159	-		Sama_3301	0.31	+0.4
3,928,186	+		Sama_3301	0.34	+0.3
3,928,186	+		Sama_3301	0.34	-0.3
3,928,186	+		Sama_3301	0.34	+0.2
3,928,187	-		Sama_3301	0.34	-0.8
3,928,188	+		Sama_3301	0.34	+0.5
3,928,188	+		Sama_3301	0.34	+0.9
3,928,188	+		Sama_3301	0.34	-2.2
3,928,188	+		Sama_3301	0.34	+0.4
3,928,188	+		Sama_3301	0.34	+0.2
3,928,188	+		Sama_3301	0.34	-0.8
3,928,189	-		Sama_3301	0.34	+0.7
3,928,189	-		Sama_3301	0.34	-1.5
3,928,189	-		Sama_3301	0.34	-0.1
3,928,209	+		Sama_3301	0.36	+0.7
3,928,209	+		Sama_3301	0.36	+0.8
3,928,209	+		Sama_3301	0.36	-0.2
3,928,209	+		Sama_3301	0.36	-0.4
3,928,210	-		Sama_3301	0.37	+0.6
3,928,210	-		Sama_3301	0.37	+0.9
3,928,210	-		Sama_3301	0.37	+0.3
3,928,243	-		Sama_3301	0.40	-0.2
3,928,243	-		Sama_3301	0.40	+0.8
3,928,254	+		Sama_3301	0.42	-1.4
3,928,255	-		Sama_3301	0.42	-0.1
3,928,255	-		Sama_3301	0.42	+0.8
3,928,255	-		Sama_3301	0.42	+0.8
3,928,278	+		Sama_3301	0.45	+0.5
3,928,278	+		Sama_3301	0.45	+0.4
3,928,278	+		Sama_3301	0.45	+1.2
3,928,278	+		Sama_3301	0.45	+2.5
3,928,279	-		Sama_3301	0.45	-0.6
3,928,279	-		Sama_3301	0.45	+1.2
3,928,279	-		Sama_3301	0.45	-0.8
3,928,279	-		Sama_3301	0.45	+0.4
3,928,288	-		Sama_3301	0.46	+1.1
3,928,288	-		Sama_3301	0.46	+0.6
3,928,335	+		Sama_3301	0.51	-0.4
3,928,371	+		Sama_3301	0.55	+0.2
3,928,389	+		Sama_3301	0.57	-0.1
3,928,389	+		Sama_3301	0.57	+0.7
3,928,390	-		Sama_3301	0.58	-0.4
3,928,398	+		Sama_3301	0.59	-0.3
3,928,398	+		Sama_3301	0.59	-0.3
3,928,399	-		Sama_3301	0.59	+0.8
3,928,539	+		Sama_3301	0.75	+0.1
3,928,601	+		Sama_3301	0.82	-0.5
3,928,601	+		Sama_3301	0.82	-0.9
3,928,635	+		Sama_3301	0.86	-1.8
3,928,635	+		Sama_3301	0.86	-1.9
3,928,635	+		Sama_3301	0.86	+2.3
3,928,636	-		Sama_3301	0.86	-0.4
3,928,636	-		Sama_3301	0.86	-0.3
3,928,636	-		Sama_3301	0.86	+0.1
3,928,636	-		Sama_3301	0.86	+0.4
3,928,636	-		Sama_3301	0.86	-0.4
3,928,636	-		Sama_3301	0.86	+0.2
3,928,636	-		Sama_3301	0.86	+0.2
3,928,636	-		Sama_3301	0.86	-0.5
3,928,721	-				+0.0
3,928,734	+				-1.3
3,928,734	+				+0.7
3,928,734	+				-0.5
3,928,734	+				+0.2
3,928,734	+				-1.2
3,928,735	-				-1.0
3,928,754	+				+0.8
3,928,754	+				+0.0
3,928,755	-				-1.4
3,928,835	+				+0.4
3,928,835	+				-0.4
3,928,835	+				-0.4
3,928,835	+				+1.2
3,928,835	+				+0.1
3,928,835	+				-0.1
3,928,835	+				-1.4
3,928,836	-				-0.9
3,928,836	-				-0.3
3,928,836	-				-1.1