Strain Fitness in Shewanella amazonensis SB2B around Sama_3281

Experiment: NAG

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG
3,896,049	-		Sama_3279	0.72	-3.6
3,896,049	-		Sama_3279	0.72	-2.4
3,896,093	+		Sama_3279	0.74	-4.4
3,896,093	+		Sama_3279	0.74	-3.4
3,896,093	+		Sama_3279	0.74	-4.1
3,896,094	-		Sama_3279	0.74	-2.2
3,896,094	-		Sama_3279	0.74	-4.7
3,896,165	+		Sama_3279	0.78	-2.8
3,896,166	-		Sama_3279	0.78	-5.3
3,896,166	-		Sama_3279	0.78	-3.5
3,896,166	-		Sama_3279	0.78	-3.7
3,896,250	+		Sama_3279	0.83	-3.8
3,896,250	+		Sama_3279	0.83	-1.1
3,896,250	+		Sama_3279	0.83	-2.7
3,896,250	+		Sama_3279	0.83	-2.1
3,896,251	-		Sama_3279	0.83	-3.6
3,896,251	-		Sama_3279	0.83	-1.7
3,896,251	-		Sama_3279	0.83	-3.7
3,896,257	+		Sama_3279	0.83	-3.2
3,896,257	+		Sama_3279	0.83	-3.8
3,896,257	+		Sama_3279	0.83	-2.4
3,896,258	-		Sama_3279	0.83	-4.2
3,896,258	-		Sama_3279	0.83	-2.8
3,896,258	-		Sama_3279	0.83	-2.2
3,896,258	-		Sama_3279	0.83	-3.4
3,896,258	-		Sama_3279	0.83	-2.8
3,896,258	-		Sama_3279	0.83	-3.9
3,896,292	+		Sama_3279	0.85	-4.8
3,896,292	+		Sama_3279	0.85	-2.8
3,896,293	-		Sama_3279	0.85	-4.3
3,896,299	+		Sama_3279	0.85	-2.5
3,896,299	+		Sama_3279	0.85	-1.9
3,896,299	+		Sama_3279	0.85	-3.5
3,896,299	+		Sama_3279	0.85	-0.9
3,896,300	-		Sama_3279	0.85	-3.9
3,896,300	-		Sama_3279	0.85	-3.6
3,896,300	-		Sama_3279	0.85	-4.4
3,896,415	+				-3.5
3,896,416	-				-1.9
3,896,416	-				-2.1
3,896,416	-				-1.3
3,896,416	-				-1.7
3,896,444	+				-0.7
3,896,445	-				-3.9
3,896,531	+				-1.2
3,896,563	-				-2.9
3,896,563	-				-3.8
3,896,567	+				-2.4
3,896,567	+				-3.5
3,896,567	+				-3.5
3,896,568	-				-2.5
3,896,616	+				-3.0
3,896,616	+				-1.7
3,896,616	+				-3.5
3,896,617	-				-0.7
3,896,617	-				-0.6
3,896,620	+				-4.2
3,896,620	+				-3.1
3,896,620	+				-3.7
3,896,620	+				-1.7
3,896,620	+				-0.1
3,896,621	-				+0.3
3,896,621	-				-1.1
3,896,621	-				-0.7
3,896,621	-				-1.0
3,896,621	-				-0.1
3,896,621	-				-1.0
3,896,621	-				-0.3
3,896,621	-				-0.7
3,896,621	-				+0.6
3,896,625	+				-3.5
3,896,625	+				-0.7
3,896,625	+				-3.9
3,896,625	+				-3.2
3,896,625	+				-3.2
3,896,625	+				-1.7
3,896,626	-				+0.3
3,896,626	-				-1.3
3,896,626	-				-1.2
3,896,626	-				-0.7
3,896,626	-				-0.7
3,896,626	-				+1.1
3,896,655	+				-4.0
3,896,728	+	ilvM	Sama_3280	0.26	-3.6
3,896,728	+	ilvM	Sama_3280	0.26	-2.5
3,896,728	+	ilvM	Sama_3280	0.26	-2.9
3,896,728	+	ilvM	Sama_3280	0.26	-1.1
3,896,728	+	ilvM	Sama_3280	0.26	-2.0
3,896,728	+	ilvM	Sama_3280	0.26	-0.8
3,896,729	-	ilvM	Sama_3280	0.26	-0.1
3,896,729	-	ilvM	Sama_3280	0.26	-0.1
3,896,729	-	ilvM	Sama_3280	0.26	-1.9
3,896,729	-	ilvM	Sama_3280	0.26	-1.0
3,896,787	+	ilvM	Sama_3280	0.49	-2.5
3,896,787	+	ilvM	Sama_3280	0.49	-4.4
3,896,787	+	ilvM	Sama_3280	0.49	-2.4
3,896,787	+	ilvM	Sama_3280	0.49	-2.4
3,896,788	-	ilvM	Sama_3280	0.50	-1.3
3,896,812	+	ilvM	Sama_3280	0.59	-1.7
3,896,813	-	ilvM	Sama_3280	0.60	-0.1
3,896,813	-	ilvM	Sama_3280	0.60	+0.2
3,896,813	-	ilvM	Sama_3280	0.60	-0.4
3,896,813	-	ilvM	Sama_3280	0.60	-1.2
3,896,813	-	ilvM	Sama_3280	0.60	-0.2
3,896,813	-	ilvM	Sama_3280	0.60	-1.2
3,896,813	-	ilvM	Sama_3280	0.60	-0.9
3,896,830	+	ilvM	Sama_3280	0.66	-3.7
3,896,831	-	ilvM	Sama_3280	0.67	-1.7
3,896,831	-	ilvM	Sama_3280	0.67	-1.6
3,896,905	+				-5.0
3,896,905	+				-3.9
3,896,905	+				-2.9
3,896,906	-				-0.8
3,896,940	+				-3.2
3,896,940	+				-4.3
3,896,940	+				-3.8
3,896,940	+				-3.6
3,896,940	+				-2.5
3,896,983	-				-1.6
3,896,995	+				-3.8
3,896,995	+				-1.7
3,896,995	+				-1.4
3,896,995	+				-3.2
3,896,995	+				-3.0
3,896,995	+				-2.2
3,896,996	-				-2.0
3,896,996	-				-1.4
3,896,996	-				-1.6
3,896,996	-				-1.1
3,896,996	-				-3.0
3,896,996	-				-1.1
3,896,996	-				-0.1
3,896,996	-				+0.1
3,896,996	-				-0.3
3,896,996	-				-0.7
3,896,996	-				+0.1
3,897,014	+				-2.7
3,897,014	+				-4.4
3,897,014	+				-2.4
3,897,015	-				-0.8
3,897,015	-				-0.9
3,897,015	-				-2.8
3,897,149	+		Sama_3281	0.14	-1.7
3,897,149	+		Sama_3281	0.14	-3.1
3,897,150	-		Sama_3281	0.14	-1.8
3,897,210	+		Sama_3281	0.18	-2.9
3,897,249	+		Sama_3281	0.20	-1.1
3,897,249	+		Sama_3281	0.20	-1.1
3,897,249	+		Sama_3281	0.20	-3.7
3,897,250	-		Sama_3281	0.20	-0.6
3,897,411	+		Sama_3281	0.30	-2.3
3,897,411	+		Sama_3281	0.30	-3.8
3,897,411	+		Sama_3281	0.30	-0.7
3,897,411	+		Sama_3281	0.30	-3.5
3,897,411	+		Sama_3281	0.30	-1.7
3,897,411	+		Sama_3281	0.30	-3.0
3,897,411	+		Sama_3281	0.30	-3.8
3,897,411	+		Sama_3281	0.30	-3.0
3,897,411	+		Sama_3281	0.30	-3.1
3,897,411	+		Sama_3281	0.30	-3.5
3,897,411	+		Sama_3281	0.30	-2.0
3,897,411	+		Sama_3281	0.30	-5.0
3,897,411	+		Sama_3281	0.30	-3.1
3,897,411	+		Sama_3281	0.30	+0.3
3,897,412	-		Sama_3281	0.30	-1.1
3,897,412	-		Sama_3281	0.30	-1.7
3,897,412	-		Sama_3281	0.30	+0.6
3,897,412	-		Sama_3281	0.30	-1.7
3,897,412	-		Sama_3281	0.30	-1.7
3,897,412	-		Sama_3281	0.30	+0.5
3,897,412	-		Sama_3281	0.30	-1.1
3,897,412	-		Sama_3281	0.30	-0.7
3,897,412	-		Sama_3281	0.30	-0.9
3,897,412	-		Sama_3281	0.30	+0.4
3,897,412	-		Sama_3281	0.30	-2.5
3,897,412	-		Sama_3281	0.30	-1.6
3,897,457	+		Sama_3281	0.33	-3.2
3,897,457	+		Sama_3281	0.33	-3.3
3,897,457	+		Sama_3281	0.33	-1.7
3,897,458	-		Sama_3281	0.33	-0.9
3,897,458	-		Sama_3281	0.33	-2.1
3,897,458	-		Sama_3281	0.33	-1.3
3,897,458	-		Sama_3281	0.33	-1.0
3,897,509	+		Sama_3281	0.36	-4.0
3,897,509	+		Sama_3281	0.36	-2.1
3,897,509	+		Sama_3281	0.36	-3.2
3,897,509	+		Sama_3281	0.36	-4.5
3,897,509	+		Sama_3281	0.36	-1.4
3,897,509	+		Sama_3281	0.36	-3.2
3,897,509	+		Sama_3281	0.36	-4.2
3,897,510	-		Sama_3281	0.36	-1.1
3,897,510	-		Sama_3281	0.36	-0.7
3,897,510	-		Sama_3281	0.36	-0.8
3,897,510	-		Sama_3281	0.36	+0.9
3,897,510	-		Sama_3281	0.36	-0.6
3,897,510	-		Sama_3281	0.36	-0.8
3,897,510	-		Sama_3281	0.36	-1.6
3,897,510	-		Sama_3281	0.36	-1.7
3,897,510	-		Sama_3281	0.36	-2.0
3,897,533	+		Sama_3281	0.37	-2.7
3,897,534	-		Sama_3281	0.37	-0.7
3,897,534	-		Sama_3281	0.37	-2.5
3,897,586	+		Sama_3281	0.40	-2.5
3,897,586	+		Sama_3281	0.40	-1.4
3,897,586	+		Sama_3281	0.40	-1.9
3,897,586	+		Sama_3281	0.40	-3.6
3,897,586	+		Sama_3281	0.40	-4.0
3,897,586	+		Sama_3281	0.40	-2.2
3,897,586	+		Sama_3281	0.40	-4.9
3,897,586	+		Sama_3281	0.40	-3.7
3,897,586	+		Sama_3281	0.40	-4.0
3,897,586	+		Sama_3281	0.40	-3.2
3,897,586	+		Sama_3281	0.40	+0.9
3,897,586	+		Sama_3281	0.40	-3.8
3,897,587	-		Sama_3281	0.40	-3.8
3,897,587	-		Sama_3281	0.40	-3.4
3,897,587	-		Sama_3281	0.40	-2.1
3,897,587	-		Sama_3281	0.40	-1.2
3,897,587	-		Sama_3281	0.40	-3.2
3,897,587	-		Sama_3281	0.40	-2.4
3,897,587	-		Sama_3281	0.40	-0.7
3,897,587	-		Sama_3281	0.40	-0.7
3,897,587	-		Sama_3281	0.40	-2.5
3,897,588	+		Sama_3281	0.41	-2.9
3,897,588	+		Sama_3281	0.41	-2.1
3,897,588	+		Sama_3281	0.41	-2.5
3,897,589	-		Sama_3281	0.41	-0.9
3,897,589	-		Sama_3281	0.41	-1.8
3,897,682	+		Sama_3281	0.46	-3.1
3,897,682	+		Sama_3281	0.46	-3.7
3,897,682	+		Sama_3281	0.46	-2.1
3,897,682	+		Sama_3281	0.46	-1.2
3,897,682	+		Sama_3281	0.46	-3.3
3,897,682	+		Sama_3281	0.46	-3.2
3,897,682	+		Sama_3281	0.46	-1.7
3,897,682	+		Sama_3281	0.46	-5.2
3,897,682	+		Sama_3281	0.46	-2.7
3,897,682	+		Sama_3281	0.46	-5.0
3,897,682	+		Sama_3281	0.46	-3.0
3,897,682	+		Sama_3281	0.46	-3.3
3,897,682	+		Sama_3281	0.46	-3.2
3,897,682	+		Sama_3281	0.46	-1.4
3,897,682	+		Sama_3281	0.46	-0.7
3,897,683	-		Sama_3281	0.46	-2.2
3,897,683	-		Sama_3281	0.46	-1.9
3,897,683	-		Sama_3281	0.46	-0.4
3,897,683	-		Sama_3281	0.46	-3.2
3,897,683	-		Sama_3281	0.46	-1.4
3,897,683	-		Sama_3281	0.46	-2.5
3,897,683	-		Sama_3281	0.46	-2.1
3,897,683	-		Sama_3281	0.46	-1.4
3,897,683	-		Sama_3281	0.46	-2.8
3,897,683	-		Sama_3281	0.46	-2.8
3,897,683	-		Sama_3281	0.46	-0.6
3,897,683	-		Sama_3281	0.46	-2.7
3,897,837	-		Sama_3281	0.55	-2.2
3,897,894	+		Sama_3281	0.59	-3.7
3,897,894	+		Sama_3281	0.59	-0.7
3,897,894	+		Sama_3281	0.59	-3.9
3,897,894	+		Sama_3281	0.59	-3.9
3,897,895	-		Sama_3281	0.59	-3.4
3,897,895	-		Sama_3281	0.59	-3.0
3,897,895	-		Sama_3281	0.59	-1.9
3,897,896	+		Sama_3281	0.59	-1.7
3,897,896	+		Sama_3281	0.59	-2.1
3,897,896	+		Sama_3281	0.59	-1.1
3,897,896	+		Sama_3281	0.59	-5.0
3,897,896	+		Sama_3281	0.59	-1.4
3,897,896	+		Sama_3281	0.59	-4.2
3,897,896	+		Sama_3281	0.59	-4.4
3,897,896	+		Sama_3281	0.59	-3.2
3,897,896	+		Sama_3281	0.59	-2.8
3,897,896	+		Sama_3281	0.59	-2.2
3,897,896	+		Sama_3281	0.59	-4.0
3,897,896	+		Sama_3281	0.59	-2.2
3,897,896	+		Sama_3281	0.59	-2.5
3,897,896	+		Sama_3281	0.59	-3.7
3,897,896	+		Sama_3281	0.59	-4.2
3,897,896	+		Sama_3281	0.59	-4.0
3,897,896	+		Sama_3281	0.59	-4.6
3,897,896	+		Sama_3281	0.59	-2.2
3,897,896	+		Sama_3281	0.59	-1.9
3,897,896	+		Sama_3281	0.59	-2.2
3,897,896	+		Sama_3281	0.59	-1.9
3,897,896	+		Sama_3281	0.59	-1.9
3,897,896	+		Sama_3281	0.59	-4.3
3,897,896	+		Sama_3281	0.59	-3.7
3,897,896	+		Sama_3281	0.59	-3.8
3,897,897	-		Sama_3281	0.59	-1.7
3,897,897	-		Sama_3281	0.59	-1.1
3,897,897	-		Sama_3281	0.59	-1.1
3,897,897	-		Sama_3281	0.59	-1.9
3,897,897	-		Sama_3281	0.59	-2.7
3,897,897	-		Sama_3281	0.59	-0.3
3,897,897	-		Sama_3281	0.59	-2.8
3,897,897	-		Sama_3281	0.59	-0.1
3,897,897	-		Sama_3281	0.59	-2.5
3,897,897	-		Sama_3281	0.59	-2.3
3,897,897	-		Sama_3281	0.59	-0.1
3,897,897	-		Sama_3281	0.59	-1.1
3,897,897	-		Sama_3281	0.59	-2.7
3,897,897	-		Sama_3281	0.59	-0.9
3,897,897	-		Sama_3281	0.59	-0.2
3,897,897	-		Sama_3281	0.59	-3.4
3,897,897	-		Sama_3281	0.59	-2.1
3,897,897	-		Sama_3281	0.59	-2.2
3,897,909	+		Sama_3281	0.60	-1.9
3,897,910	-		Sama_3281	0.60	-2.2
3,897,962	+		Sama_3281	0.63	-1.1
3,897,962	+		Sama_3281	0.63	-3.9
3,897,962	+		Sama_3281	0.63	-3.6
3,897,962	+		Sama_3281	0.63	-1.1
3,897,962	+		Sama_3281	0.63	-2.7
3,897,962	+		Sama_3281	0.63	-0.7
3,897,963	-		Sama_3281	0.63	-2.2
3,897,963	-		Sama_3281	0.63	-3.8
3,897,963	-		Sama_3281	0.63	-1.1
3,897,963	-		Sama_3281	0.63	-2.8
3,897,963	-		Sama_3281	0.63	-1.8
3,897,963	-		Sama_3281	0.63	-2.5
3,898,064	+		Sama_3281	0.69	-2.2
3,898,064	+		Sama_3281	0.69	-3.0
3,898,064	+		Sama_3281	0.69	-1.7
3,898,078	+		Sama_3281	0.70	-1.7
3,898,079	-		Sama_3281	0.70	-1.7
3,898,086	+		Sama_3281	0.70	-3.5
3,898,087	-		Sama_3281	0.70	-3.8
3,898,188	+		Sama_3281	0.76	-4.1
3,898,189	-		Sama_3281	0.76	-2.2
3,898,189	-		Sama_3281	0.76	-1.4
3,898,189	-		Sama_3281	0.76	-2.6
3,898,189	-		Sama_3281	0.76	-1.5
3,898,218	+		Sama_3281	0.78	-1.1
3,898,219	-		Sama_3281	0.78	-2.0
3,898,219	-		Sama_3281	0.78	-3.1
3,898,219	-		Sama_3281	0.78	-2.9
3,898,219	-		Sama_3281	0.78	-2.9
3,898,225	+		Sama_3281	0.79	-1.7
3,898,225	+		Sama_3281	0.79	-2.9
3,898,225	+		Sama_3281	0.79	-0.7
3,898,225	+		Sama_3281	0.79	-2.2
3,898,225	+		Sama_3281	0.79	-3.2
3,898,226	-		Sama_3281	0.79	-2.2
3,898,226	-		Sama_3281	0.79	+0.1
3,898,226	-		Sama_3281	0.79	-1.1
3,898,226	-		Sama_3281	0.79	-1.4
3,898,226	-		Sama_3281	0.79	-1.1
3,898,226	-		Sama_3281	0.79	-4.3
3,898,226	-		Sama_3281	0.79	-2.8
3,898,226	-		Sama_3281	0.79	-2.2
3,898,226	-		Sama_3281	0.79	-2.7
3,898,397	+		Sama_3281	0.89	-2.7
3,898,397	+		Sama_3281	0.89	-4.5
3,898,397	+		Sama_3281	0.89	-2.1
3,898,475	+				-2.9
3,898,475	+				-1.4
3,898,475	+				-2.9
3,898,475	+				-1.1
3,898,475	+				-2.1
3,898,475	+				-1.1
3,898,476	-				-2.4
3,898,476	-				-5.2
3,898,476	-				-2.3
3,898,538	-				-4.2
3,898,538	-				-3.3
3,898,604	+				-2.2
3,898,604	+				-2.9
3,898,604	+				-3.5
3,898,604	+				-2.4
3,898,604	+				-3.8
3,898,605	-				-0.7
3,898,605	-				+0.2
3,898,609	+				-1.1
3,898,609	+				-2.2
3,898,610	-				-0.4
3,898,688	+				-1.7
3,898,688	+				-2.9
3,898,688	+				-3.8
3,898,688	+				-3.9
3,898,689	-				-0.5
3,898,689	-				-3.4
3,898,689	-				-3.2
3,898,689	-				-0.1
3,898,728	+				-2.7
3,898,728	+				-2.4
3,898,729	-				-0.8
3,898,729	-				-0.9
3,898,729	-				-1.0
3,898,729	-				-2.2
3,898,729	-				+0.5
3,898,729	-				-0.0
3,898,731	+				-0.7
3,898,731	+				-2.0
3,898,731	+				-1.4
3,898,731	+				-2.4
3,898,731	+				-4.0
3,898,744	-				-1.8
3,898,746	+				-4.1
3,898,746	+				-2.2
3,898,747	-				-0.2
3,898,747	-				-0.3
3,898,747	-				+1.7
3,898,776	+				-3.7
3,898,776	+				-2.9
3,898,798	+				-3.4
3,898,798	+				-3.9
3,898,798	+				-2.4
3,898,798	+				-4.3
3,898,798	+				-3.1
3,898,799	-				-2.2
3,898,799	-				-2.7
3,898,799	-				-0.5
3,898,801	+				-3.1
3,898,801	+				-2.5
3,898,801	+				-2.4
3,898,802	-				-0.7
3,898,802	-				-1.7
3,898,802	-				-1.6
3,898,802	-				-0.4
3,898,802	-				-0.7
3,898,846	+				-1.7
3,898,847	-				-1.2
3,898,853	+				-1.8
3,898,854	-				+1.7
3,898,875	-				-1.0
3,898,948	+				+0.6
3,898,949	-				+1.1
3,898,999	+				+0.2
3,898,999	+				+0.5
3,899,000	-				-0.9
3,899,000	-				+0.3
3,899,020	+				-0.3
3,899,021	-				+0.2
3,899,021	-				-0.7
3,899,080	+				+0.0
3,899,081	-				+0.2
3,899,116	+				-3.1
3,899,116	+				+0.1
3,899,116	+				-5.0
3,899,117	-				-5.5
3,899,117	-				-2.4
3,899,233	+		Sama_3282	0.10	-2.7
3,899,234	-		Sama_3282	0.10	-2.9
3,899,234	-		Sama_3282	0.10	-3.4
3,899,257	+		Sama_3282	0.12	-2.4
3,899,257	+		Sama_3282	0.12	-2.2
3,899,257	+		Sama_3282	0.12	-1.7
3,899,258	-		Sama_3282	0.12	-3.8
3,899,258	-		Sama_3282	0.12	-3.7
3,899,258	-		Sama_3282	0.12	-4.2
3,899,274	+		Sama_3282	0.13	-4.9
3,899,275	-		Sama_3282	0.13	-3.7
3,899,275	-		Sama_3282	0.13	-1.7
3,899,296	+		Sama_3282	0.15	-4.2
3,899,297	-		Sama_3282	0.15	-2.5
3,899,297	-		Sama_3282	0.15	-3.5
3,899,297	-		Sama_3282	0.15	-1.1
3,899,297	-		Sama_3282	0.15	-1.9
3,899,297	-		Sama_3282	0.15	-1.7
3,899,297	-		Sama_3282	0.15	-2.7
3,899,297	-		Sama_3282	0.15	-4.4
3,899,305	+		Sama_3282	0.15	-2.8
3,899,341	+		Sama_3282	0.18	-1.9
3,899,341	+		Sama_3282	0.18	-3.5
3,899,341	+		Sama_3282	0.18	-4.4
3,899,342	-		Sama_3282	0.18	-2.4
3,899,342	-		Sama_3282	0.18	-0.1
3,899,351	+		Sama_3282	0.18	-4.2
3,899,398	+		Sama_3282	0.22	-4.1
3,899,398	+		Sama_3282	0.22	-1.9
3,899,398	+		Sama_3282	0.22	-1.1
3,899,401	+		Sama_3282	0.22	-2.4
3,899,401	+		Sama_3282	0.22	-3.6
3,899,402	-		Sama_3282	0.22	-3.5
3,899,500	+		Sama_3282	0.28	-2.0
3,899,500	+		Sama_3282	0.28	-4.5
3,899,500	+		Sama_3282	0.28	-3.1
3,899,500	+		Sama_3282	0.28	-2.7
3,899,500	+		Sama_3282	0.28	-2.2
3,899,500	+		Sama_3282	0.28	-2.5
3,899,501	-		Sama_3282	0.28	-3.2
3,899,501	-		Sama_3282	0.28	-3.8
3,899,501	-		Sama_3282	0.28	-1.1
3,899,501	-		Sama_3282	0.28	-1.8
3,899,501	-		Sama_3282	0.28	-3.2