Strain Fitness in Shewanella amazonensis SB2B around Sama_2478

Experiment: NAG

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG
2,980,067	+		Sama_2476	0.84	+0.9
2,980,068	-		Sama_2476	0.84	-1.0
2,980,068	-		Sama_2476	0.84	+2.6
2,980,068	-		Sama_2476	0.84	+0.7
2,980,075	+		Sama_2476	0.85	+0.6
2,980,075	+		Sama_2476	0.85	-0.3
2,980,089	+		Sama_2476	0.86	+1.0
2,980,089	+		Sama_2476	0.86	-1.4
2,980,089	+		Sama_2476	0.86	+1.0
2,980,090	-		Sama_2476	0.87	+0.2
2,980,176	+				-0.5
2,980,176	+				+1.0
2,980,176	+				+0.1
2,980,177	-				-1.3
2,980,177	-				-0.1
2,980,202	+				-0.6
2,980,202	+				-0.4
2,980,203	-				+1.1
2,980,203	-				-1.2
2,980,212	+				+1.0
2,980,213	-				-0.0
2,980,259	+				-2.1
2,980,275	+				-1.0
2,980,276	-				+0.6
2,980,356	+		Sama_2477	0.13	+0.7
2,980,356	+		Sama_2477	0.13	+0.2
2,980,357	-		Sama_2477	0.13	-1.9
2,980,403	+		Sama_2477	0.19	+0.3
2,980,404	-		Sama_2477	0.20	+0.2
2,980,404	-		Sama_2477	0.20	-0.2
2,980,436	+		Sama_2477	0.24	-1.0
2,980,504	+		Sama_2477	0.34	+0.7
2,980,641	+		Sama_2477	0.53	-1.0
2,980,641	+		Sama_2477	0.53	-0.5
2,980,642	-		Sama_2477	0.53	-0.5
2,980,642	-		Sama_2477	0.53	-0.8
2,980,642	-		Sama_2477	0.53	-0.4
2,980,651	+		Sama_2477	0.55	+0.1
2,980,652	-		Sama_2477	0.55	-0.3
2,980,652	-		Sama_2477	0.55	+0.5
2,980,669	+		Sama_2477	0.57	-0.8
2,980,693	+		Sama_2477	0.60	-1.0
2,980,693	+		Sama_2477	0.60	-0.4
2,980,693	+		Sama_2477	0.60	+0.8
2,980,693	+		Sama_2477	0.60	+1.6
2,980,693	+		Sama_2477	0.60	-0.3
2,980,693	+		Sama_2477	0.60	-0.4
2,980,694	-		Sama_2477	0.61	-0.6
2,980,696	+		Sama_2477	0.61	-0.9
2,980,696	+		Sama_2477	0.61	+0.4
2,980,696	+		Sama_2477	0.61	+0.3
2,980,697	-		Sama_2477	0.61	-0.2
2,980,697	-		Sama_2477	0.61	+2.2
2,980,822	+		Sama_2477	0.79	-0.3
2,980,860	+		Sama_2477	0.84	+0.5
2,980,860	+		Sama_2477	0.84	-1.7
2,980,860	+		Sama_2477	0.84	+0.7
2,980,860	+		Sama_2477	0.84	-0.4
2,980,860	+		Sama_2477	0.84	+1.6
2,980,860	+		Sama_2477	0.84	+0.2
2,980,861	-		Sama_2477	0.84	-1.0
2,980,861	-		Sama_2477	0.84	-0.4
2,980,861	-		Sama_2477	0.84	-0.4
2,980,861	-		Sama_2477	0.84	+0.3
2,980,864	+		Sama_2477	0.85	-0.3
2,980,864	+		Sama_2477	0.85	+0.2
2,980,864	+		Sama_2477	0.85	+0.6
2,980,864	+		Sama_2477	0.85	+1.6
2,980,864	+		Sama_2477	0.85	+0.6
2,980,864	+		Sama_2477	0.85	-0.5
2,980,864	+		Sama_2477	0.85	-0.5
2,980,864	+		Sama_2477	0.85	+1.5
2,980,865	-		Sama_2477	0.85	+0.9
2,980,865	-		Sama_2477	0.85	-0.1
2,980,865	-		Sama_2477	0.85	+0.0
2,980,865	-		Sama_2477	0.85	-0.1
2,980,865	-		Sama_2477	0.85	+0.2
2,980,865	-		Sama_2477	0.85	-0.5
2,980,865	-		Sama_2477	0.85	+0.3
2,980,879	+		Sama_2477	0.87	-0.7
2,980,879	+		Sama_2477	0.87	-0.1
2,980,879	+		Sama_2477	0.87	-1.2
2,980,879	+		Sama_2477	0.87	-0.2
2,980,880	-		Sama_2477	0.87	-0.2
2,980,905	+				-0.6
2,980,906	-				+0.2
2,980,906	-				-1.2
2,980,906	-				+0.9
2,980,998	+				+0.1
2,980,999	-				+0.0
2,980,999	-				+1.3
2,981,002	+				-0.3
2,981,003	-				+0.4
2,981,208	+		Sama_2478	0.18	-0.4
2,981,208	+		Sama_2478	0.18	-0.6
2,981,219	+		Sama_2478	0.19	-3.9
2,981,219	+		Sama_2478	0.19	-1.4
2,981,219	+		Sama_2478	0.19	-2.9
2,981,220	-		Sama_2478	0.19	-3.1
2,981,236	+		Sama_2478	0.21	-0.4
2,981,236	+		Sama_2478	0.21	-4.3
2,981,236	+		Sama_2478	0.21	-2.0
2,981,236	+		Sama_2478	0.21	-2.0
2,981,236	+		Sama_2478	0.21	-3.6
2,981,236	+		Sama_2478	0.21	-2.1
2,981,236	+		Sama_2478	0.21	-3.0
2,981,263	+		Sama_2478	0.24	-2.0
2,981,263	+		Sama_2478	0.24	-2.0
2,981,263	+		Sama_2478	0.24	-1.5
2,981,263	+		Sama_2478	0.24	-3.7
2,981,264	-		Sama_2478	0.25	-3.6
2,981,277	-		Sama_2478	0.26	-1.4
2,981,277	-		Sama_2478	0.26	-1.7
2,981,288	+		Sama_2478	0.27	-2.4
2,981,288	+		Sama_2478	0.27	-2.5
2,981,299	+		Sama_2478	0.29	-1.6
2,981,299	+		Sama_2478	0.29	-2.2
2,981,299	+		Sama_2478	0.29	-3.5
2,981,300	-		Sama_2478	0.29	-2.9
2,981,300	-		Sama_2478	0.29	-2.9
2,981,342	+		Sama_2478	0.34	-3.9
2,981,342	+		Sama_2478	0.34	-2.4
2,981,343	-		Sama_2478	0.34	-3.7
2,981,382	+		Sama_2478	0.39	-1.7
2,981,382	+		Sama_2478	0.39	-2.6
2,981,382	+		Sama_2478	0.39	-1.7
2,981,382	+		Sama_2478	0.39	-2.0
2,981,383	-		Sama_2478	0.39	-3.0
2,981,383	-		Sama_2478	0.39	-2.6
2,981,414	+		Sama_2478	0.43	-4.0
2,981,529	-		Sama_2478	0.57	-3.4
2,981,555	+		Sama_2478	0.60	-1.4
2,981,557	+		Sama_2478	0.60	-3.2
2,981,557	+		Sama_2478	0.60	-1.7
2,981,557	+		Sama_2478	0.60	-1.4
2,981,557	+		Sama_2478	0.60	-1.4
2,981,557	+		Sama_2478	0.60	-2.4
2,981,561	+		Sama_2478	0.61	-4.1
2,981,561	+		Sama_2478	0.61	-3.7
2,981,561	+		Sama_2478	0.61	-3.0
2,981,561	+		Sama_2478	0.61	-3.2
2,981,567	+		Sama_2478	0.62	-2.4
2,981,567	+		Sama_2478	0.62	-2.4
2,981,567	+		Sama_2478	0.62	-2.2
2,981,568	-		Sama_2478	0.62	-2.2
2,981,595	+		Sama_2478	0.65	-4.3
2,981,707	+		Sama_2478	0.79	-1.0
2,981,708	-		Sama_2478	0.79	-2.6
2,981,708	-		Sama_2478	0.79	-1.7
2,981,843	+				-3.8
2,981,843	+				-3.4
2,981,844	-				-3.1
2,981,895	+				+0.1
2,981,895	+				-0.4
2,981,895	+				-0.8
2,981,895	+				+0.6
2,981,906	+				-0.2
2,981,906	+				-0.7
2,982,436	+				+0.2
2,982,447	+				-0.3
2,982,504	+		Sama_2480	0.11	+1.4
2,982,504	+		Sama_2480	0.11	-0.3
2,982,518	+		Sama_2480	0.16	-0.4
2,982,518	+		Sama_2480	0.16	+0.2
2,982,518	+		Sama_2480	0.16	+0.8
2,982,518	+		Sama_2480	0.16	+0.6
2,982,518	+		Sama_2480	0.16	-2.0
2,982,518	+		Sama_2480	0.16	-0.4
2,982,518	+		Sama_2480	0.16	+0.4
2,982,519	-		Sama_2480	0.16	+0.6
2,982,519	-		Sama_2480	0.16	-0.3
2,982,519	-		Sama_2480	0.16	-0.9
2,982,519	-		Sama_2480	0.16	-0.3
2,982,519	-		Sama_2480	0.16	+0.6
2,982,519	-		Sama_2480	0.16	-0.1
2,982,519	-		Sama_2480	0.16	-0.3
2,982,519	-		Sama_2480	0.16	+0.2
2,982,519	-		Sama_2480	0.16	+0.5
2,982,519	-		Sama_2480	0.16	-1.0
2,982,519	-		Sama_2480	0.16	-1.4
2,982,522	+		Sama_2480	0.17	+0.3
2,982,522	+		Sama_2480	0.17	+0.0
2,982,522	+		Sama_2480	0.17	-0.2
2,982,522	+		Sama_2480	0.17	+0.9
2,982,523	-		Sama_2480	0.17	+0.0
2,982,573	+		Sama_2480	0.35	-0.4
2,982,674	-		Sama_2480	0.70	-1.1
2,982,700	+		Sama_2480	0.79	+1.3
2,982,708	+		Sama_2480	0.82	+1.6
2,982,712	+		Sama_2480	0.83	+0.8
2,982,712	+		Sama_2480	0.83	+1.1
2,982,712	+		Sama_2480	0.83	-0.7
2,982,712	+		Sama_2480	0.83	+0.2
2,982,713	-		Sama_2480	0.83	-1.1
2,982,713	-		Sama_2480	0.83	+1.9
2,982,713	-		Sama_2480	0.83	-0.1
2,982,729	+		Sama_2480	0.89	+0.8
2,982,730	-		Sama_2480	0.89	+0.1
2,982,758	+				-1.0
2,982,778	+				-0.2
2,982,778	+				+0.2
2,982,779	-				+0.4
2,982,791	-				+0.6
2,982,791	-				+0.0
2,982,805	+				+0.0
2,982,805	+				+1.8
2,982,806	-				+1.6
2,982,807	+				+2.2
2,982,807	+				-0.8
2,982,807	+				+0.3
2,982,807	+				-1.0
2,982,807	+				+0.2
2,982,807	+				+2.1
2,982,808	-				-0.4
2,982,808	-				+2.2
2,982,808	-				-0.6
2,982,808	-				+0.3
2,982,811	+				-0.3
2,982,811	+				+0.0
2,982,811	+				+0.9
2,982,811	+				-3.5
2,982,811	+				-1.0
2,982,811	+				-0.8
2,982,811	+				-0.3
2,982,812	-				+1.2
2,982,812	-				+0.6
2,982,812	-				+0.2
2,982,814	-				+0.5
2,982,814	-				+0.2
2,982,836	+				+0.1
2,982,836	+				-0.7
2,982,836	+				+1.1
2,982,874	+				-0.1
2,982,874	+				-0.2