Strain Fitness in Shewanella amazonensis SB2B around Sama_2006

Experiment: NAG

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG
2,435,405	+				-1.6
2,435,418	+				-1.2
2,435,432	+				-1.2
2,435,488	+				+0.5
2,435,488	+				-0.5
2,435,488	+				-1.6
2,435,488	+				+0.5
2,435,489	-				+0.9
2,435,489	-				+0.9
2,435,489	-				+0.8
2,435,492	+				-0.5
2,435,492	+				+1.4
2,435,492	+				+0.8
2,435,492	+				+1.1
2,435,493	-				+0.9
2,435,493	-				+1.4
2,435,493	-				-1.1
2,435,536	+				-0.1
2,435,537	-				-1.6
2,435,537	-				-0.2
2,435,537	-				+0.9
2,435,540	+				-2.0
2,435,593	-				-0.7
2,435,593	-				-0.5
2,435,602	+				-0.6
2,435,602	+				+0.4
2,435,603	-				-0.9
2,435,603	-				-0.1
2,435,603	-				-0.9
2,435,614	+				+0.4
2,435,614	+				+1.0
2,435,615	-				-0.5
2,435,645	+				-0.9
2,435,720	-				-1.2
2,435,746	+		Sama_2005	0.11	-0.9
2,435,746	+		Sama_2005	0.11	+0.4
2,435,746	+		Sama_2005	0.11	+0.0
2,435,747	-		Sama_2005	0.11	+0.4
2,435,747	-		Sama_2005	0.11	-0.9
2,435,747	-		Sama_2005	0.11	+0.4
2,435,747	-		Sama_2005	0.11	-0.6
2,435,820	+		Sama_2005	0.21	+0.9
2,435,822	+		Sama_2005	0.22	+0.4
2,435,822	+		Sama_2005	0.22	+0.4
2,435,822	+		Sama_2005	0.22	+1.1
2,435,822	+		Sama_2005	0.22	+0.0
2,435,822	+		Sama_2005	0.22	-0.0
2,435,822	+		Sama_2005	0.22	-0.5
2,435,822	+		Sama_2005	0.22	+1.8
2,435,822	+		Sama_2005	0.22	-0.4
2,435,822	+		Sama_2005	0.22	-0.2
2,435,822	+		Sama_2005	0.22	+0.6
2,435,822	+		Sama_2005	0.22	+0.0
2,435,823	-		Sama_2005	0.22	-0.1
2,435,823	-		Sama_2005	0.22	-0.4
2,435,823	-		Sama_2005	0.22	-0.6
2,435,823	-		Sama_2005	0.22	+0.9
2,435,823	-		Sama_2005	0.22	-0.4
2,435,823	-		Sama_2005	0.22	+1.1
2,435,823	-		Sama_2005	0.22	-0.9
2,435,823	-		Sama_2005	0.22	-2.4
2,435,823	-		Sama_2005	0.22	-0.9
2,435,823	-		Sama_2005	0.22	+2.3
2,435,823	-		Sama_2005	0.22	+0.7
2,435,826	+		Sama_2005	0.22	-0.5
2,435,826	+		Sama_2005	0.22	-2.2
2,435,827	-		Sama_2005	0.22	+0.4
2,435,827	-		Sama_2005	0.22	+0.4
2,435,971	+		Sama_2005	0.43	-0.1
2,435,972	-		Sama_2005	0.43	+0.4
2,435,972	-		Sama_2005	0.43	-0.1
2,435,972	-		Sama_2005	0.43	+0.4
2,435,972	-		Sama_2005	0.43	+0.1
2,435,974	-		Sama_2005	0.44	+0.5
2,436,046	-		Sama_2005	0.54	-1.2
2,436,046	-		Sama_2005	0.54	+0.5
2,436,095	+		Sama_2005	0.61	+0.1
2,436,095	+		Sama_2005	0.61	+0.0
2,436,095	+		Sama_2005	0.61	-3.3
2,436,096	-		Sama_2005	0.61	+0.4
2,436,096	-		Sama_2005	0.61	+0.1
2,436,096	-		Sama_2005	0.61	-0.6
2,436,096	-		Sama_2005	0.61	-0.8
2,436,096	-		Sama_2005	0.61	-1.5
2,436,096	-		Sama_2005	0.61	-0.1
2,436,096	-		Sama_2005	0.61	+3.7
2,436,096	-		Sama_2005	0.61	+0.9
2,436,096	-		Sama_2005	0.61	-0.2
2,436,096	-		Sama_2005	0.61	-0.5
2,436,119	-		Sama_2005	0.64	+1.9
2,436,266	+		Sama_2005	0.85	-1.0
2,436,266	+		Sama_2005	0.85	+0.4
2,436,266	+		Sama_2005	0.85	+0.1
2,436,267	-		Sama_2005	0.86	+0.6
2,436,267	-		Sama_2005	0.86	-1.0
2,436,267	-		Sama_2005	0.86	+0.2
2,436,267	-		Sama_2005	0.86	+0.8
2,436,267	-		Sama_2005	0.86	-0.4
2,436,267	-		Sama_2005	0.86	-0.4
2,436,267	-		Sama_2005	0.86	+2.8
2,436,267	-		Sama_2005	0.86	+0.8
2,436,267	-		Sama_2005	0.86	+0.2
2,436,267	-		Sama_2005	0.86	+1.0
2,436,267	-		Sama_2005	0.86	+0.8
2,436,328	+				+1.2
2,436,328	+				-1.1
2,436,329	-				-0.4
2,436,447	+				-0.4
2,436,447	+				+1.4
2,436,448	-				-1.4
2,436,448	-				-1.3
2,436,448	-				+0.2
2,436,448	-				+0.2
2,436,448	-				+0.4
2,436,448	-				-0.3
2,436,491	+				-0.4
2,436,492	-				-0.2
2,436,590	+		Sama_2006	0.11	-0.8
2,436,591	-		Sama_2006	0.11	-0.2
2,436,601	-		Sama_2006	0.11	+0.6
2,436,681	+		Sama_2006	0.15	-2.6
2,436,681	+		Sama_2006	0.15	-2.0
2,436,681	+		Sama_2006	0.15	+2.4
2,436,682	-		Sama_2006	0.15	+0.2
2,436,682	-		Sama_2006	0.15	-2.0
2,436,692	+		Sama_2006	0.15	+0.1
2,436,693	-		Sama_2006	0.15	-3.2
2,436,693	-		Sama_2006	0.15	+0.1
2,436,693	-		Sama_2006	0.15	-0.9
2,436,693	-		Sama_2006	0.15	-0.5
2,436,693	-		Sama_2006	0.15	-0.4
2,436,700	+		Sama_2006	0.16	-0.5
2,436,701	-		Sama_2006	0.16	+0.2
2,436,737	+		Sama_2006	0.17	-2.0
2,436,737	+		Sama_2006	0.17	-0.2
2,436,737	+		Sama_2006	0.17	-0.2
2,436,737	+		Sama_2006	0.17	-0.5
2,436,738	-		Sama_2006	0.17	-0.1
2,436,738	-		Sama_2006	0.17	+0.4
2,436,738	-		Sama_2006	0.17	+0.1
2,436,738	-		Sama_2006	0.17	+0.8
2,436,755	+		Sama_2006	0.18	+1.4
2,436,755	+		Sama_2006	0.18	+0.6
2,436,759	+		Sama_2006	0.18	-0.1
2,436,759	+		Sama_2006	0.18	+1.6
2,436,760	-		Sama_2006	0.18	+0.2
2,436,760	-		Sama_2006	0.18	-1.1
2,436,760	-		Sama_2006	0.18	+1.1
2,436,801	+		Sama_2006	0.20	+0.3
2,436,815	+		Sama_2006	0.21	+1.1
2,436,840	+		Sama_2006	0.22	-0.1
2,436,840	+		Sama_2006	0.22	+1.9
2,436,885	+		Sama_2006	0.24	-0.3
2,436,885	+		Sama_2006	0.24	-1.4
2,436,885	+		Sama_2006	0.24	-0.3
2,437,011	+		Sama_2006	0.30	-1.2
2,437,012	-		Sama_2006	0.30	-0.1
2,437,156	+		Sama_2006	0.37	-1.8
2,437,156	+		Sama_2006	0.37	-0.2
2,437,156	+		Sama_2006	0.37	+1.2
2,437,157	-		Sama_2006	0.37	+0.0
2,437,157	-		Sama_2006	0.37	-0.4
2,437,157	-		Sama_2006	0.37	+1.4
2,437,157	-		Sama_2006	0.37	-0.6
2,437,157	-		Sama_2006	0.37	-0.2
2,437,162	+		Sama_2006	0.37	-0.6
2,437,163	-		Sama_2006	0.37	-2.0
2,437,229	-		Sama_2006	0.40	-1.1
2,437,362	+		Sama_2006	0.46	-0.6
2,437,362	+		Sama_2006	0.46	+0.4
2,437,362	+		Sama_2006	0.46	+0.9
2,437,363	-		Sama_2006	0.46	+0.1
2,437,363	-		Sama_2006	0.46	-1.2
2,437,682	+		Sama_2006	0.61	+1.1
2,437,683	-		Sama_2006	0.61	+0.4
2,437,683	-		Sama_2006	0.61	-1.1
2,437,700	+		Sama_2006	0.62	-2.4
2,437,836	+		Sama_2006	0.68	-1.4
2,437,836	+		Sama_2006	0.68	-0.9
2,437,837	-		Sama_2006	0.68	+0.7
2,437,845	+		Sama_2006	0.69	+1.2
2,437,856	+		Sama_2006	0.69	+1.1
2,437,857	-		Sama_2006	0.69	-0.3
2,437,857	-		Sama_2006	0.69	-0.6
2,437,959	+		Sama_2006	0.74	-2.6
2,437,960	-		Sama_2006	0.74	+0.4
2,438,062	+		Sama_2006	0.79	+0.6
2,438,062	+		Sama_2006	0.79	+0.1
2,438,063	-		Sama_2006	0.79	+0.9
2,438,086	+		Sama_2006	0.80	-0.2
2,438,087	-		Sama_2006	0.80	-0.1
2,438,118	+		Sama_2006	0.81	+0.1
2,438,119	-		Sama_2006	0.81	-0.2
2,438,161	-		Sama_2006	0.83	-0.3
2,438,185	-		Sama_2006	0.84	+1.3
2,438,198	+		Sama_2006	0.85	-0.2
2,438,198	+		Sama_2006	0.85	+0.4
2,438,198	+		Sama_2006	0.85	+1.0
2,438,212	+		Sama_2006	0.86	+0.0
2,438,213	-		Sama_2006	0.86	+0.8
2,438,213	-		Sama_2006	0.86	-0.4
2,438,231	+		Sama_2006	0.86	+0.1
2,438,256	-		Sama_2006	0.88	+1.6
2,438,300	+		Sama_2006	0.90	+0.1
2,438,300	+		Sama_2006	0.90	-1.5
2,438,382	-				+0.0
2,438,385	-				-1.0
2,438,409	+				-0.3
2,438,409	+				+0.5
2,438,409	+				-2.1
2,438,410	-				+1.9
2,438,410	-				-1.2
2,438,411	+				+0.9
2,438,411	+				+0.2
2,438,486	+				+0.6
2,438,486	+				-1.2
2,438,486	+				-0.6
2,438,553	-				-0.8
2,438,658	-				-0.2
2,438,658	-				+0.3
2,438,665	+				-0.6
2,438,678	+				-2.0
2,438,678	+				+0.6
2,438,688	+				+1.1
2,438,688	+				-0.6
2,438,760	+				+0.9
2,438,760	+				-0.1
2,438,760	+				-0.3
2,438,760	+				+0.7
2,438,761	-				+1.0
2,438,761	-				+0.4
2,438,765	+				+0.5
2,438,766	-				-1.3
2,438,799	+		Sama_2007	0.12	-0.7
2,438,800	-		Sama_2007	0.12	-0.5
2,438,832	-		Sama_2007	0.15	+0.4
2,438,886	-		Sama_2007	0.21	+0.3
2,438,948	+		Sama_2007	0.27	+0.0
2,438,948	+		Sama_2007	0.27	-0.5
2,438,948	+		Sama_2007	0.27	-0.9
2,438,951	+		Sama_2007	0.27	+0.4
2,438,951	+		Sama_2007	0.27	+0.5
2,438,951	+		Sama_2007	0.27	+0.4
2,438,952	-		Sama_2007	0.27	-0.6
2,438,952	-		Sama_2007	0.27	+0.4
2,439,008	+		Sama_2007	0.33	-0.0
2,439,036	+		Sama_2007	0.36	-0.8
2,439,063	+		Sama_2007	0.38	-1.0
2,439,063	+		Sama_2007	0.38	-0.6
2,439,063	+		Sama_2007	0.38	+2.3
2,439,063	+		Sama_2007	0.38	-0.4
2,439,064	-		Sama_2007	0.38	+1.6
2,439,064	-		Sama_2007	0.38	+0.4
2,439,064	-		Sama_2007	0.38	-0.5
2,439,115	+		Sama_2007	0.43	+0.0
2,439,212	+		Sama_2007	0.53	-1.9
2,439,212	+		Sama_2007	0.53	+0.3
2,439,212	+		Sama_2007	0.53	+0.2
2,439,212	+		Sama_2007	0.53	+2.2
2,439,212	+		Sama_2007	0.53	+0.2
2,439,212	+		Sama_2007	0.53	-0.2
2,439,213	-		Sama_2007	0.53	-2.8
2,439,302	+		Sama_2007	0.62	+0.4
2,439,302	+		Sama_2007	0.62	+0.4
2,439,347	+		Sama_2007	0.67	+0.0
2,439,347	+		Sama_2007	0.67	-0.9
2,439,347	+		Sama_2007	0.67	-2.2
2,439,347	+		Sama_2007	0.67	-0.9
2,439,348	-		Sama_2007	0.67	+0.8
2,439,348	-		Sama_2007	0.67	+0.6
2,439,361	-		Sama_2007	0.68	+1.5
2,439,368	+		Sama_2007	0.69	+0.4
2,439,369	-		Sama_2007	0.69	-0.8
2,439,400	+		Sama_2007	0.72	+0.2
2,439,400	+		Sama_2007	0.72	-0.9
2,439,401	-		Sama_2007	0.72	+1.8
2,439,401	-		Sama_2007	0.72	+1.2
2,439,404	+		Sama_2007	0.72	+0.5
2,439,404	+		Sama_2007	0.72	-3.2
2,439,404	+		Sama_2007	0.72	+2.1
2,439,404	+		Sama_2007	0.72	+1.4
2,439,404	+		Sama_2007	0.72	-0.0
2,439,404	+		Sama_2007	0.72	-2.4
2,439,404	+		Sama_2007	0.72	+0.3
2,439,405	-		Sama_2007	0.72	+0.5
2,439,405	-		Sama_2007	0.72	-0.4
2,439,406	+		Sama_2007	0.72	-0.3
2,439,406	+		Sama_2007	0.72	+1.0
2,439,406	+		Sama_2007	0.72	-0.8
2,439,406	+		Sama_2007	0.72	-0.8
2,439,406	+		Sama_2007	0.72	-3.3
2,439,406	+		Sama_2007	0.72	+0.6
2,439,407	-		Sama_2007	0.73	+2.4
2,439,407	-		Sama_2007	0.73	-2.4
2,439,442	+		Sama_2007	0.76	-0.4
2,439,443	-		Sama_2007	0.76	-1.9
2,439,452	+		Sama_2007	0.77	+1.0
2,439,452	+		Sama_2007	0.77	+1.2
2,439,452	+		Sama_2007	0.77	+0.7
2,439,453	-		Sama_2007	0.77	+1.7