Strain Fitness in Shewanella amazonensis SB2B around Sama_1287

Experiment: NAG

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG
1,573,836	+		Sama_1285	0.27	+0.1
1,573,836	+		Sama_1285	0.27	-0.2
1,573,836	+		Sama_1285	0.27	-0.1
1,573,836	+		Sama_1285	0.27	-0.9
1,573,837	-		Sama_1285	0.27	-1.3
1,573,837	-		Sama_1285	0.27	+0.3
1,573,837	-		Sama_1285	0.27	-0.8
1,573,935	+		Sama_1285	0.42	+0.5
1,573,935	+		Sama_1285	0.42	-1.0
1,573,935	+		Sama_1285	0.42	-3.2
1,573,936	-		Sama_1285	0.42	+0.5
1,573,942	-		Sama_1285	0.43	+0.6
1,573,942	-		Sama_1285	0.43	-0.2
1,574,012	+		Sama_1285	0.54	+0.0
1,574,012	+		Sama_1285	0.54	-0.1
1,574,012	+		Sama_1285	0.54	+0.0
1,574,013	-		Sama_1285	0.54	-1.5
1,574,013	-		Sama_1285	0.54	+0.1
1,574,127	-		Sama_1285	0.71	+0.7
1,574,127	-		Sama_1285	0.71	-0.0
1,574,250	+		Sama_1285	0.89	-1.1
1,574,251	-		Sama_1285	0.89	+0.6
1,574,251	-		Sama_1285	0.89	-1.9
1,574,262	+				+1.3
1,574,322	+				-0.9
1,574,363	-				+0.4
1,574,363	-				+0.7
1,574,363	-				+0.3
1,574,400	-				-0.5
1,574,413	-				+0.7
1,574,418	+				-1.3
1,574,419	-				+0.1
1,574,423	+				-0.1
1,574,424	-				+0.5
1,574,436	+		Sama_1286	0.13	+0.5
1,574,436	+		Sama_1286	0.13	-0.1
1,574,437	-		Sama_1286	0.13	-1.6
1,574,472	+		Sama_1286	0.24	+2.1
1,574,496	+		Sama_1286	0.32	+0.3
1,574,496	+		Sama_1286	0.32	+1.6
1,574,497	-		Sama_1286	0.33	-0.2
1,574,552	-		Sama_1286	0.51	-1.3
1,574,552	-		Sama_1286	0.51	-0.7
1,574,575	-		Sama_1286	0.58	-1.3
1,574,645	-		Sama_1286	0.82	-0.9
1,574,645	-		Sama_1286	0.82	+0.8
1,574,645	-		Sama_1286	0.82	+1.2
1,574,724	+				+0.8
1,574,724	+				+0.3
1,574,724	+				-0.2
1,574,725	-				+1.0
1,574,746	+				-0.5
1,574,747	-				+0.1
1,574,757	-				+0.2
1,574,761	-				+0.5
1,574,766	+				-0.5
1,574,893	+		Sama_1287	0.15	-1.0
1,574,893	+		Sama_1287	0.15	-0.5
1,574,894	-		Sama_1287	0.15	-2.5
1,574,894	-		Sama_1287	0.15	-0.2
1,574,929	+		Sama_1287	0.24	-1.3
1,574,929	+		Sama_1287	0.24	-1.6
1,574,929	+		Sama_1287	0.24	+0.5
1,574,930	-		Sama_1287	0.24	-0.2
1,574,930	-		Sama_1287	0.24	-0.8
1,574,930	-		Sama_1287	0.24	-0.5
1,574,940	+		Sama_1287	0.26	-0.9
1,574,965	-		Sama_1287	0.33	-0.2
1,574,965	-		Sama_1287	0.33	-1.4
1,574,979	-		Sama_1287	0.36	-0.3
1,575,005	+		Sama_1287	0.42	-0.5
1,575,005	+		Sama_1287	0.42	+0.5
1,575,005	+		Sama_1287	0.42	-1.9
1,575,005	+		Sama_1287	0.42	-1.6
1,575,005	+		Sama_1287	0.42	+0.2
1,575,006	-		Sama_1287	0.43	-0.6
1,575,006	-		Sama_1287	0.43	-0.7
1,575,006	-		Sama_1287	0.43	-0.3
1,575,030	+		Sama_1287	0.49	-0.2
1,575,045	-		Sama_1287	0.52	-0.0
1,575,074	+		Sama_1287	0.60	+0.1
1,575,074	+		Sama_1287	0.60	-1.1
1,575,075	-		Sama_1287	0.60	-0.9
1,575,075	-		Sama_1287	0.60	-1.3
1,575,075	-		Sama_1287	0.60	-2.3
1,575,107	-		Sama_1287	0.68	-1.5
1,575,218	+				-0.1
1,575,218	+				+0.7
1,575,219	-				-0.3
1,575,219	-				+0.1
1,575,222	+				-0.7
1,575,222	+				-1.5
1,575,222	+				-1.0
1,575,222	+				-1.7
1,575,223	-				+0.1
1,575,241	+				-0.8
1,575,242	-				-0.9
1,575,242	-				-0.7
1,575,242	-				-0.5
1,575,242	-				-0.5
1,575,249	+				-1.9
1,575,250	-				-1.3
1,575,259	+				-1.1
1,575,260	-				-0.4
1,575,260	-				+1.3
1,575,267	+				-0.6
1,575,267	+				-0.9
1,575,267	+				+0.8
1,575,268	-				-0.9
1,575,268	-				+0.3
1,575,270	+				-1.1
1,575,270	+				-0.3
1,575,271	-				-0.9
1,575,271	-				+0.8
1,575,271	-				-0.8
1,575,383	+				-0.5
1,575,384	-				-0.3
1,575,449	+				-1.0
1,575,449	+				-1.1
1,575,449	+				+1.4
1,575,450	-				+0.5
1,575,450	-				+0.2
1,575,450	-				+0.5
1,575,464	-		Sama_1288	0.11	+0.5
1,575,464	-		Sama_1288	0.11	+1.8
1,575,484	+		Sama_1288	0.13	-0.5
1,575,484	+		Sama_1288	0.13	+3.0
1,575,484	+		Sama_1288	0.13	+1.3
1,575,485	-		Sama_1288	0.13	+0.5
1,575,499	+		Sama_1288	0.14	+2.5
1,575,683	+		Sama_1288	0.30	-1.1
1,575,684	-		Sama_1288	0.30	-2.0
1,575,684	-		Sama_1288	0.30	-0.5
1,575,684	-		Sama_1288	0.30	-2.0
1,575,688	+		Sama_1288	0.30	-0.4
1,575,688	+		Sama_1288	0.30	-0.1
1,575,688	+		Sama_1288	0.30	+1.0
1,575,688	+		Sama_1288	0.30	-0.5
1,575,688	+		Sama_1288	0.30	+0.5
1,575,689	-		Sama_1288	0.30	-0.3
1,575,689	-		Sama_1288	0.30	+1.0
1,575,689	-		Sama_1288	0.30	+0.3
1,575,689	-		Sama_1288	0.30	-0.1
1,575,760	-		Sama_1288	0.36	+0.0
1,575,863	+		Sama_1288	0.45	-0.7
1,575,888	-		Sama_1288	0.47	+0.3
1,575,943	+		Sama_1288	0.52	+1.1
1,575,952	+		Sama_1288	0.53	+0.0
1,575,953	-		Sama_1288	0.53	+0.5
1,575,953	-		Sama_1288	0.53	-0.7
1,575,991	+		Sama_1288	0.56	+0.7
1,576,019	+		Sama_1288	0.58	+0.2
1,576,019	+		Sama_1288	0.58	-0.4
1,576,020	-		Sama_1288	0.58	-1.0
1,576,020	-		Sama_1288	0.58	+0.4
1,576,020	-		Sama_1288	0.58	-0.5
1,576,074	+		Sama_1288	0.63	-0.8
1,576,074	+		Sama_1288	0.63	+0.3
1,576,075	-		Sama_1288	0.63	+0.5
1,576,087	+		Sama_1288	0.64	+0.2
1,576,088	-		Sama_1288	0.64	-2.1
1,576,147	+		Sama_1288	0.69	-2.4
1,576,147	+		Sama_1288	0.69	+0.8
1,576,148	-		Sama_1288	0.69	+0.7
1,576,213	+		Sama_1288	0.75	-1.9
1,576,213	+		Sama_1288	0.75	+0.7
1,576,214	-		Sama_1288	0.75	+1.0
1,576,214	-		Sama_1288	0.75	-0.4
1,576,230	+		Sama_1288	0.76	-1.3
1,576,230	+		Sama_1288	0.76	-0.3