Strain Fitness in Shewanella oneidensis MR-1 around SO0597
Experiment: Aluminum chloride 4 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Aluminum chloride 4 mM |
---|---|---|---|---|---|
remove | |||||
623,147 | + | -0.1 | |||
623,316 | - | SO0597 | 0.46 | -0.3 | |
623,322 | - | SO0597 | 0.49 | +0.2 | |
623,332 | - | SO0597 | 0.53 | -2.0 | |
623,350 | + | SO0597 | 0.62 | -0.6 | |
623,350 | + | SO0597 | 0.62 | -0.7 | |
623,350 | + | SO0597 | 0.62 | -0.4 | |
623,358 | - | SO0597 | 0.66 | -0.5 | |
623,358 | - | SO0597 | 0.66 | -0.4 | |
623,409 | - | -0.3 | |||
623,424 | - | +0.1 | |||
623,448 | + | -0.3 | |||
623,450 | - | -0.5 | |||
623,489 | - | -0.0 | |||
623,570 | - | yjeF | SO0598 | 0.11 | -1.2 |
623,574 | + | yjeF | SO0598 | 0.12 | +0.1 |
623,575 | - | yjeF | SO0598 | 0.12 | +0.2 |
623,581 | - | yjeF | SO0598 | 0.12 | +0.7 |
623,646 | - | yjeF | SO0598 | 0.17 | +0.0 |
623,734 | - | yjeF | SO0598 | 0.22 | -0.4 |
623,780 | + | yjeF | SO0598 | 0.25 | +1.3 |
623,788 | - | yjeF | SO0598 | 0.26 | -4.3 |
623,788 | - | yjeF | SO0598 | 0.26 | +0.2 |
623,807 | + | yjeF | SO0598 | 0.27 | +0.5 |
623,807 | + | yjeF | SO0598 | 0.27 | -0.8 |
623,815 | - | yjeF | SO0598 | 0.28 | -0.2 |
623,815 | - | yjeF | SO0598 | 0.28 | -0.1 |
623,820 | - | yjeF | SO0598 | 0.28 | +0.2 |
623,827 | - | yjeF | SO0598 | 0.29 | -0.6 |
624,022 | + | yjeF | SO0598 | 0.42 | +0.2 |
624,022 | + | yjeF | SO0598 | 0.42 | +0.2 |
624,022 | + | yjeF | SO0598 | 0.42 | +0.1 |
624,030 | - | yjeF | SO0598 | 0.42 | -0.1 |
624,127 | - | yjeF | SO0598 | 0.49 | -0.1 |
624,191 | - | yjeF | SO0598 | 0.53 | +0.6 |
624,244 | + | yjeF | SO0598 | 0.56 | +0.8 |
624,249 | + | yjeF | SO0598 | 0.57 | -4.4 |
624,262 | - | yjeF | SO0598 | 0.58 | -0.2 |
624,287 | - | yjeF | SO0598 | 0.59 | -1.2 |
624,421 | + | yjeF | SO0598 | 0.68 | +0.0 |
Or see this region's nucleotide sequence