Experiment: m.b. benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_651 and HP15_652 are separated by 123 nucleotides HP15_652 and HP15_653 are separated by 50 nucleotides HP15_653 and HP15_654 overlap by 1 nucleotides
HP15_651: HP15_651 - protein putative phage tail tape measure protein-like protein, at 672,672 to 674,426
_651
HP15_652: HP15_652 - conserved hypothetical protein, at 674,550 to 674,834
_652
HP15_653: HP15_653 - phage major tail tube protein, at 674,885 to 675,391
_653
HP15_654: HP15_654 - major tail sheath protein, at 675,391 to 676,908
_654
Position (kb) 674
675
676 Strain fitness (log2 ratio) -1
0
1 at 673.898 kb on - strand, within HP15_651 at 673.917 kb on - strand, within HP15_651 at 673.929 kb on + strand, within HP15_651 at 673.933 kb on - strand, within HP15_651 at 673.993 kb on - strand, within HP15_651 at 674.225 kb on - strand, within HP15_651 at 674.352 kb on + strand at 674.461 kb on - strand at 674.463 kb on + strand at 674.518 kb on + strand at 674.574 kb on + strand at 674.576 kb on + strand at 674.710 kb on - strand, within HP15_652 at 674.741 kb on + strand, within HP15_652 at 674.811 kb on + strand at 674.819 kb on - strand at 674.843 kb on - strand at 674.941 kb on + strand, within HP15_653 at 675.027 kb on + strand, within HP15_653 at 675.032 kb on + strand, within HP15_653 at 675.054 kb on - strand, within HP15_653 at 675.111 kb on - strand, within HP15_653 at 675.139 kb on - strand, within HP15_653 at 675.198 kb on + strand, within HP15_653 at 675.250 kb on + strand, within HP15_653 at 675.250 kb on + strand, within HP15_653 at 675.250 kb on - strand, within HP15_653 at 675.258 kb on - strand, within HP15_653 at 675.258 kb on - strand, within HP15_653 at 675.258 kb on - strand, within HP15_653 at 675.309 kb on - strand, within HP15_653 at 675.312 kb on + strand, within HP15_653 at 675.333 kb on + strand, within HP15_653 at 675.333 kb on + strand, within HP15_653 at 675.341 kb on - strand at 675.341 kb on - strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.376 kb on - strand at 675.440 kb on + strand at 675.455 kb on - strand at 675.482 kb on + strand at 675.488 kb on + strand at 675.525 kb on - strand at 675.589 kb on - strand, within HP15_654 at 675.619 kb on + strand, within HP15_654 at 675.644 kb on + strand, within HP15_654 at 675.644 kb on + strand at 675.814 kb on - strand, within HP15_654 at 675.827 kb on + strand, within HP15_654 at 675.877 kb on + strand, within HP15_654 at 675.903 kb on + strand, within HP15_654 at 675.944 kb on + strand, within HP15_654 at 675.951 kb on + strand, within HP15_654 at 675.952 kb on - strand, within HP15_654 at 675.964 kb on + strand, within HP15_654 at 676.061 kb on - strand, within HP15_654 at 676.063 kb on + strand, within HP15_654 at 676.069 kb on - strand, within HP15_654 at 676.071 kb on - strand, within HP15_654 at 676.130 kb on + strand, within HP15_654 at 676.160 kb on + strand, within HP15_654 at 676.173 kb on - strand, within HP15_654 at 676.221 kb on + strand, within HP15_654 at 676.221 kb on + strand, within HP15_654 at 676.224 kb on - strand, within HP15_654 at 676.308 kb on - strand, within HP15_654 at 676.379 kb on + strand, within HP15_654
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.29 mg/ml remove 673,898 - HP15_651 0.70 -1.1 673,917 - HP15_651 0.71 -0.6 673,929 + HP15_651 0.72 -1.1 673,933 - HP15_651 0.72 -0.1 673,993 - HP15_651 0.75 +0.2 674,225 - HP15_651 0.88 +1.1 674,352 + -0.4 674,461 - +0.5 674,463 + +0.6 674,518 + -0.9 674,574 + -0.5 674,576 + +0.4 674,710 - HP15_652 0.56 -0.1 674,741 + HP15_652 0.67 -0.1 674,811 + +0.6 674,819 - +0.5 674,843 - -0.4 674,941 + HP15_653 0.11 -1.7 675,027 + HP15_653 0.28 -0.5 675,032 + HP15_653 0.29 -0.9 675,054 - HP15_653 0.33 +0.4 675,111 - HP15_653 0.45 -0.5 675,139 - HP15_653 0.50 -0.6 675,198 + HP15_653 0.62 -0.4 675,250 + HP15_653 0.72 -0.9 675,250 + HP15_653 0.72 +0.2 675,250 - HP15_653 0.72 -0.7 675,258 - HP15_653 0.74 -0.7 675,258 - HP15_653 0.74 -0.1 675,258 - HP15_653 0.74 -0.3 675,309 - HP15_653 0.84 +1.3 675,312 + HP15_653 0.84 -1.2 675,333 + HP15_653 0.88 +1.7 675,333 + HP15_653 0.88 +1.0 675,341 - -1.0 675,341 - -0.2 675,366 - +0.0 675,366 - +0.5 675,366 - -0.5 675,366 - +0.1 675,376 - +0.5 675,440 + +0.0 675,455 - -0.9 675,482 + -0.3 675,488 + -1.0 675,525 - +0.0 675,589 - HP15_654 0.13 +0.5 675,619 + HP15_654 0.15 -0.3 675,644 + HP15_654 0.17 -0.4 675,644 + +0.9 675,814 - HP15_654 0.28 -0.4 675,827 + HP15_654 0.29 +0.2 675,877 + HP15_654 0.32 -0.1 675,903 + HP15_654 0.34 +0.5 675,944 + HP15_654 0.36 +0.5 675,951 + HP15_654 0.37 +1.3 675,952 - HP15_654 0.37 -0.9 675,964 + HP15_654 0.38 -0.4 676,061 - HP15_654 0.44 +0.3 676,063 + HP15_654 0.44 -1.0 676,069 - HP15_654 0.45 -0.5 676,071 - HP15_654 0.45 -0.5 676,130 + HP15_654 0.49 +0.2 676,160 + HP15_654 0.51 -0.5 676,173 - HP15_654 0.52 -1.0 676,221 + HP15_654 0.55 -0.5 676,221 + HP15_654 0.55 -0.8 676,224 - HP15_654 0.55 +0.1 676,308 - HP15_654 0.60 +0.2 676,379 + HP15_654 0.65 +0.5
Or see this region's nucleotide sequence