Experiment: m.b. benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_406 and HP15_407 are separated by 185 nucleotides HP15_407 and HP15_408 are separated by 57 nucleotides
HP15_406: HP15_406 - excinuclease ABC, ATPase subunit (A), at 399,903 to 402,743
_406
HP15_407: HP15_407 - transporter, major facilitator family, at 402,929 to 404,299
_407
HP15_408: HP15_408 - single-stranded DNA-binding protein, at 404,357 to 404,881
_408
Position (kb) 402
403
404
405 Strain fitness (log2 ratio) -2
-1
0
1 at 401.969 kb on + strand, within HP15_406 at 402.022 kb on - strand, within HP15_406 at 402.047 kb on + strand, within HP15_406 at 402.066 kb on + strand, within HP15_406 at 402.101 kb on + strand, within HP15_406 at 402.126 kb on - strand, within HP15_406 at 402.126 kb on - strand, within HP15_406 at 402.144 kb on + strand, within HP15_406 at 402.152 kb on - strand, within HP15_406 at 402.152 kb on - strand, within HP15_406 at 402.152 kb on - strand, within HP15_406 at 402.227 kb on - strand, within HP15_406 at 402.380 kb on - strand, within HP15_406 at 402.473 kb on - strand at 402.648 kb on - strand at 402.702 kb on - strand at 402.712 kb on - strand at 402.882 kb on - strand at 402.916 kb on - strand at 402.953 kb on + strand at 402.987 kb on + strand at 402.995 kb on - strand at 402.995 kb on - strand at 403.005 kb on - strand at 403.034 kb on + strand at 403.042 kb on - strand at 403.042 kb on - strand at 403.043 kb on + strand at 403.077 kb on - strand, within HP15_407 at 403.080 kb on + strand, within HP15_407 at 403.092 kb on + strand, within HP15_407 at 403.210 kb on - strand, within HP15_407 at 403.241 kb on + strand, within HP15_407 at 403.289 kb on + strand, within HP15_407 at 403.297 kb on - strand, within HP15_407 at 403.297 kb on - strand, within HP15_407 at 403.307 kb on + strand, within HP15_407 at 403.312 kb on + strand, within HP15_407 at 403.395 kb on + strand, within HP15_407 at 403.425 kb on + strand, within HP15_407 at 403.523 kb on + strand, within HP15_407 at 403.533 kb on - strand, within HP15_407 at 403.595 kb on - strand, within HP15_407 at 403.743 kb on + strand, within HP15_407 at 403.808 kb on + strand, within HP15_407 at 403.930 kb on + strand, within HP15_407 at 403.965 kb on - strand, within HP15_407 at 403.970 kb on + strand, within HP15_407 at 404.031 kb on + strand, within HP15_407 at 404.220 kb on + strand at 404.343 kb on + strand at 405.149 kb on + strand at 405.163 kb on + strand at 405.171 kb on - strand at 405.171 kb on - strand at 405.240 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.29 mg/ml remove 401,969 + HP15_406 0.73 -0.5 402,022 - HP15_406 0.75 -0.9 402,047 + HP15_406 0.75 +0.3 402,066 + HP15_406 0.76 +1.6 402,101 + HP15_406 0.77 +0.2 402,126 - HP15_406 0.78 +0.8 402,126 - HP15_406 0.78 +0.4 402,144 + HP15_406 0.79 -0.3 402,152 - HP15_406 0.79 -0.4 402,152 - HP15_406 0.79 -0.0 402,152 - HP15_406 0.79 +0.2 402,227 - HP15_406 0.82 -0.1 402,380 - HP15_406 0.87 +0.2 402,473 - +0.4 402,648 - +0.3 402,702 - +0.8 402,712 - -0.1 402,882 - -0.1 402,916 - +0.8 402,953 + -0.8 402,987 + -0.6 402,995 - -0.5 402,995 - -0.2 403,005 - -0.2 403,034 + -0.6 403,042 - -0.8 403,042 - -2.4 403,043 + -0.8 403,077 - HP15_407 0.11 -1.6 403,080 + HP15_407 0.11 -2.4 403,092 + HP15_407 0.12 -1.2 403,210 - HP15_407 0.20 -0.5 403,241 + HP15_407 0.23 -0.2 403,289 + HP15_407 0.26 -1.5 403,297 - HP15_407 0.27 +1.2 403,297 - HP15_407 0.27 +0.1 403,307 + HP15_407 0.28 -0.2 403,312 + HP15_407 0.28 -0.2 403,395 + HP15_407 0.34 -0.8 403,425 + HP15_407 0.36 -1.1 403,523 + HP15_407 0.43 -1.4 403,533 - HP15_407 0.44 -1.2 403,595 - HP15_407 0.49 -0.4 403,743 + HP15_407 0.59 -1.1 403,808 + HP15_407 0.64 -0.5 403,930 + HP15_407 0.73 +0.0 403,965 - HP15_407 0.76 -1.7 403,970 + HP15_407 0.76 +0.2 404,031 + HP15_407 0.80 -0.8 404,220 + +0.7 404,343 + +0.5 405,149 + -0.1 405,163 + +1.1 405,171 - +0.4 405,171 - -0.0 405,240 - +0.6
Or see this region's nucleotide sequence