Strain Fitness in Marinobacter adhaerens HP15 around HP15_406

Experiment: m.b. benzoic 0.29 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_404 and HP15_405 are separated by 90 nucleotidesHP15_405 and HP15_406 are separated by 202 nucleotidesHP15_406 and HP15_407 are separated by 185 nucleotides HP15_404: HP15_404 - DNA-directed RNA polymerase subunit alpha, at 398,309 to 399,268 _404 HP15_405: HP15_405 - ribosomal protein L17, at 399,359 to 399,700 _405 HP15_406: HP15_406 - excinuclease ABC, ATPase subunit (A), at 399,903 to 402,743 _406 HP15_407: HP15_407 - transporter, major facilitator family, at 402,929 to 404,299 _407 Position (kb) 399 400 401 402 403Strain fitness (log2 ratio) -2 -1 0 1at 400.060 kb on + strandat 400.060 kb on + strandat 400.158 kb on - strandat 400.360 kb on + strand, within HP15_406at 400.418 kb on + strand, within HP15_406at 400.426 kb on - strand, within HP15_406at 400.533 kb on - strand, within HP15_406at 400.635 kb on + strand, within HP15_406at 400.639 kb on - strand, within HP15_406at 400.661 kb on + strand, within HP15_406at 400.661 kb on + strand, within HP15_406at 400.669 kb on - strand, within HP15_406at 400.677 kb on + strand, within HP15_406at 400.682 kb on + strand, within HP15_406at 400.682 kb on + strand, within HP15_406at 400.690 kb on - strand, within HP15_406at 400.704 kb on - strand, within HP15_406at 400.708 kb on - strand, within HP15_406at 400.905 kb on - strand, within HP15_406at 400.905 kb on - strand, within HP15_406at 400.999 kb on - strand, within HP15_406at 401.012 kb on + strand, within HP15_406at 401.089 kb on - strand, within HP15_406at 401.102 kb on - strand, within HP15_406at 401.128 kb on - strand, within HP15_406at 401.232 kb on - strand, within HP15_406at 401.268 kb on - strand, within HP15_406at 401.278 kb on + strand, within HP15_406at 401.348 kb on - strand, within HP15_406at 401.507 kb on + strand, within HP15_406at 401.507 kb on + strand, within HP15_406at 401.515 kb on - strand, within HP15_406at 401.515 kb on - strand, within HP15_406at 401.515 kb on - strand, within HP15_406at 401.515 kb on - strand, within HP15_406at 401.600 kb on + strand, within HP15_406at 401.600 kb on + strand, within HP15_406at 401.608 kb on - strand, within HP15_406at 401.638 kb on - strand, within HP15_406at 401.828 kb on - strand, within HP15_406at 401.896 kb on - strand, within HP15_406at 401.969 kb on + strand, within HP15_406at 402.022 kb on - strand, within HP15_406at 402.047 kb on + strand, within HP15_406at 402.066 kb on + strand, within HP15_406at 402.101 kb on + strand, within HP15_406at 402.126 kb on - strand, within HP15_406at 402.126 kb on - strand, within HP15_406at 402.144 kb on + strand, within HP15_406at 402.152 kb on - strand, within HP15_406at 402.152 kb on - strand, within HP15_406at 402.152 kb on - strand, within HP15_406at 402.227 kb on - strand, within HP15_406at 402.380 kb on - strand, within HP15_406at 402.473 kb on - strandat 402.648 kb on - strandat 402.702 kb on - strandat 402.712 kb on - strandat 402.882 kb on - strandat 402.916 kb on - strandat 402.953 kb on + strandat 402.987 kb on + strandat 402.995 kb on - strandat 402.995 kb on - strandat 403.005 kb on - strandat 403.034 kb on + strandat 403.042 kb on - strandat 403.042 kb on - strandat 403.043 kb on + strandat 403.077 kb on - strand, within HP15_407at 403.080 kb on + strand, within HP15_407at 403.092 kb on + strand, within HP15_407at 403.210 kb on - strand, within HP15_407at 403.241 kb on + strand, within HP15_407at 403.289 kb on + strand, within HP15_407at 403.297 kb on - strand, within HP15_407at 403.297 kb on - strand, within HP15_407at 403.307 kb on + strand, within HP15_407at 403.312 kb on + strand, within HP15_407at 403.395 kb on + strand, within HP15_407at 403.425 kb on + strand, within HP15_407at 403.523 kb on + strand, within HP15_407at 403.533 kb on - strand, within HP15_407at 403.595 kb on - strand, within HP15_407at 403.743 kb on + strand, within HP15_407

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.29 mg/ml
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400,060 + +0.2
400,060 + +0.6
400,158 - -1.4
400,360 + HP15_406 0.16 -1.5
400,418 + HP15_406 0.18 -0.2
400,426 - HP15_406 0.18 +1.1
400,533 - HP15_406 0.22 -0.1
400,635 + HP15_406 0.26 -0.5
400,639 - HP15_406 0.26 +1.1
400,661 + HP15_406 0.27 +1.1
400,661 + HP15_406 0.27 -1.8
400,669 - HP15_406 0.27 +0.1
400,677 + HP15_406 0.27 +0.2
400,682 + HP15_406 0.27 -0.5
400,682 + HP15_406 0.27 +0.5
400,690 - HP15_406 0.28 +0.0
400,704 - HP15_406 0.28 +0.3
400,708 - HP15_406 0.28 +0.4
400,905 - HP15_406 0.35 -0.2
400,905 - HP15_406 0.35 -0.2
400,999 - HP15_406 0.39 +0.3
401,012 + HP15_406 0.39 +0.3
401,089 - HP15_406 0.42 +1.0
401,102 - HP15_406 0.42 -0.4
401,128 - HP15_406 0.43 +0.8
401,232 - HP15_406 0.47 +0.5
401,268 - HP15_406 0.48 +0.2
401,278 + HP15_406 0.48 +0.4
401,348 - HP15_406 0.51 +1.7
401,507 + HP15_406 0.56 +0.5
401,507 + HP15_406 0.56 +1.0
401,515 - HP15_406 0.57 +0.2
401,515 - HP15_406 0.57 +1.4
401,515 - HP15_406 0.57 +0.3
401,515 - HP15_406 0.57 -0.2
401,600 + HP15_406 0.60 +0.9
401,600 + HP15_406 0.60 +0.1
401,608 - HP15_406 0.60 +0.0
401,638 - HP15_406 0.61 +0.3
401,828 - HP15_406 0.68 +0.0
401,896 - HP15_406 0.70 -0.0
401,969 + HP15_406 0.73 -0.5
402,022 - HP15_406 0.75 -0.9
402,047 + HP15_406 0.75 +0.3
402,066 + HP15_406 0.76 +1.6
402,101 + HP15_406 0.77 +0.2
402,126 - HP15_406 0.78 +0.8
402,126 - HP15_406 0.78 +0.4
402,144 + HP15_406 0.79 -0.3
402,152 - HP15_406 0.79 -0.4
402,152 - HP15_406 0.79 -0.0
402,152 - HP15_406 0.79 +0.2
402,227 - HP15_406 0.82 -0.1
402,380 - HP15_406 0.87 +0.2
402,473 - +0.4
402,648 - +0.3
402,702 - +0.8
402,712 - -0.1
402,882 - -0.1
402,916 - +0.8
402,953 + -0.8
402,987 + -0.6
402,995 - -0.5
402,995 - -0.2
403,005 - -0.2
403,034 + -0.6
403,042 - -0.8
403,042 - -2.4
403,043 + -0.8
403,077 - HP15_407 0.11 -1.6
403,080 + HP15_407 0.11 -2.4
403,092 + HP15_407 0.12 -1.2
403,210 - HP15_407 0.20 -0.5
403,241 + HP15_407 0.23 -0.2
403,289 + HP15_407 0.26 -1.5
403,297 - HP15_407 0.27 +1.2
403,297 - HP15_407 0.27 +0.1
403,307 + HP15_407 0.28 -0.2
403,312 + HP15_407 0.28 -0.2
403,395 + HP15_407 0.34 -0.8
403,425 + HP15_407 0.36 -1.1
403,523 + HP15_407 0.43 -1.4
403,533 - HP15_407 0.44 -1.2
403,595 - HP15_407 0.49 -0.4
403,743 + HP15_407 0.59 -1.1

Or see this region's nucleotide sequence