Experiment: m.b. benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4010 and HP15_4011 are separated by 68 nucleotides HP15_4011 and HP15_4012 are separated by 78 nucleotides HP15_4012 and HP15_4013 are separated by 70 nucleotides HP15_4013 and HP15_4014 are separated by 93 nucleotides
HP15_4010: HP15_4010 - flagellar motor protein PomA, at 4,245,538 to 4,246,308
_4010
HP15_4011: HP15_4011 - protein containing DUF1232, at 4,246,377 to 4,246,796
_4011
HP15_4012: HP15_4012 - conserved hypothetical protein, at 4,246,875 to 4,247,132
_4012
HP15_4013: HP15_4013 - DTW domain containing protein, at 4,247,203 to 4,247,709
_4013
HP15_4014: HP15_4014 - FAD dependent oxidoreductase, at 4,247,803 to 4,249,461
_4014
Position (kb) 4247
4248 Strain fitness (log2 ratio) -2
-1
0
1 at 4246.445 kb on - strand, within HP15_4011 at 4246.458 kb on + strand, within HP15_4011 at 4246.543 kb on + strand, within HP15_4011 at 4246.551 kb on - strand, within HP15_4011 at 4246.694 kb on - strand, within HP15_4011 at 4246.696 kb on - strand, within HP15_4011 at 4246.802 kb on + strand at 4246.830 kb on + strand at 4246.836 kb on - strand at 4246.911 kb on + strand, within HP15_4012 at 4246.911 kb on + strand, within HP15_4012 at 4246.919 kb on - strand, within HP15_4012 at 4246.919 kb on - strand, within HP15_4012 at 4246.919 kb on - strand, within HP15_4012 at 4246.926 kb on - strand, within HP15_4012 at 4246.926 kb on - strand, within HP15_4012 at 4246.983 kb on - strand, within HP15_4012 at 4247.036 kb on + strand, within HP15_4012 at 4247.044 kb on - strand, within HP15_4012 at 4247.066 kb on - strand, within HP15_4012 at 4247.114 kb on + strand at 4247.136 kb on - strand at 4247.221 kb on - strand at 4247.251 kb on + strand at 4247.295 kb on + strand, within HP15_4013 at 4247.295 kb on + strand, within HP15_4013 at 4247.344 kb on - strand, within HP15_4013 at 4247.375 kb on + strand, within HP15_4013 at 4247.505 kb on + strand, within HP15_4013 at 4247.531 kb on - strand, within HP15_4013 at 4247.590 kb on - strand, within HP15_4013 at 4247.623 kb on - strand, within HP15_4013 at 4247.660 kb on + strand at 4247.853 kb on - strand at 4247.869 kb on - strand at 4247.897 kb on + strand at 4247.905 kb on - strand at 4247.931 kb on + strand at 4247.933 kb on - strand at 4247.939 kb on - strand at 4247.974 kb on + strand, within HP15_4014 at 4247.996 kb on + strand, within HP15_4014 at 4247.996 kb on - strand, within HP15_4014 at 4248.028 kb on - strand, within HP15_4014 at 4248.043 kb on - strand, within HP15_4014 at 4248.045 kb on + strand, within HP15_4014 at 4248.045 kb on + strand, within HP15_4014 at 4248.053 kb on - strand, within HP15_4014 at 4248.072 kb on - strand, within HP15_4014 at 4248.132 kb on + strand, within HP15_4014 at 4248.328 kb on + strand, within HP15_4014 at 4248.328 kb on + strand, within HP15_4014 at 4248.387 kb on + strand, within HP15_4014 at 4248.444 kb on - strand, within HP15_4014 at 4248.544 kb on + strand, within HP15_4014 at 4248.607 kb on - strand, within HP15_4014 at 4248.707 kb on + strand, within HP15_4014 at 4248.707 kb on + strand, within HP15_4014 at 4248.707 kb on + strand, within HP15_4014
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.29 mg/ml remove 4,246,445 - HP15_4011 0.16 -2.2 4,246,458 + HP15_4011 0.19 -1.0 4,246,543 + HP15_4011 0.40 +0.6 4,246,551 - HP15_4011 0.41 -1.0 4,246,694 - HP15_4011 0.75 +0.2 4,246,696 - HP15_4011 0.76 -0.3 4,246,802 + +0.2 4,246,830 + +0.0 4,246,836 - +0.3 4,246,911 + HP15_4012 0.14 -0.2 4,246,911 + HP15_4012 0.14 +0.4 4,246,919 - HP15_4012 0.17 -0.4 4,246,919 - HP15_4012 0.17 -1.0 4,246,919 - HP15_4012 0.17 +0.3 4,246,926 - HP15_4012 0.20 +1.4 4,246,926 - HP15_4012 0.20 -0.3 4,246,983 - HP15_4012 0.42 +0.2 4,247,036 + HP15_4012 0.62 +0.1 4,247,044 - HP15_4012 0.66 +0.2 4,247,066 - HP15_4012 0.74 +0.0 4,247,114 + +0.2 4,247,136 - -0.3 4,247,221 - -0.3 4,247,251 + +0.6 4,247,295 + HP15_4013 0.18 +0.3 4,247,295 + HP15_4013 0.18 +0.8 4,247,344 - HP15_4013 0.28 -0.2 4,247,375 + HP15_4013 0.34 +0.6 4,247,505 + HP15_4013 0.60 +0.7 4,247,531 - HP15_4013 0.65 +0.3 4,247,590 - HP15_4013 0.76 +1.7 4,247,623 - HP15_4013 0.83 -0.1 4,247,660 + +0.8 4,247,853 - +0.0 4,247,869 - +0.1 4,247,897 + +1.3 4,247,905 - -0.6 4,247,931 + +0.8 4,247,933 - +0.5 4,247,939 - +0.2 4,247,974 + HP15_4014 0.10 -0.7 4,247,996 + HP15_4014 0.12 +0.8 4,247,996 - HP15_4014 0.12 +0.1 4,248,028 - HP15_4014 0.14 -0.3 4,248,043 - HP15_4014 0.14 -0.3 4,248,045 + HP15_4014 0.15 -0.0 4,248,045 + HP15_4014 0.15 -0.2 4,248,053 - HP15_4014 0.15 +0.4 4,248,072 - HP15_4014 0.16 +0.2 4,248,132 + HP15_4014 0.20 +0.4 4,248,328 + HP15_4014 0.32 +0.4 4,248,328 + HP15_4014 0.32 -1.0 4,248,387 + HP15_4014 0.35 +0.7 4,248,444 - HP15_4014 0.39 -0.0 4,248,544 + HP15_4014 0.45 -0.3 4,248,607 - HP15_4014 0.48 -0.9 4,248,707 + HP15_4014 0.54 +0.1 4,248,707 + HP15_4014 0.54 -0.5 4,248,707 + HP15_4014 0.54 +0.3
Or see this region's nucleotide sequence