Experiment: m.b. benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3730 and HP15_3731 are separated by 135 nucleotides HP15_3731 and HP15_3732 are separated by 281 nucleotides
HP15_3730: HP15_3730 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor, at 3,950,858 to 3,952,411
_3730
HP15_3731: HP15_3731 - sulfide-quinone reductase, at 3,952,547 to 3,953,815
_3731
HP15_3732: HP15_3732 - metallo-beta-lactamase family protein, at 3,954,097 to 3,955,005
_3732
Position (kb)
3952
3953
3954 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3951.556 kb on - strand, within HP15_3730 at 3951.557 kb on + strand, within HP15_3730 at 3951.588 kb on + strand, within HP15_3730 at 3951.596 kb on - strand, within HP15_3730 at 3951.596 kb on - strand, within HP15_3730 at 3951.677 kb on + strand, within HP15_3730 at 3951.679 kb on + strand, within HP15_3730 at 3951.685 kb on - strand, within HP15_3730 at 3951.687 kb on - strand, within HP15_3730 at 3951.697 kb on - strand, within HP15_3730 at 3951.718 kb on - strand, within HP15_3730 at 3951.727 kb on - strand, within HP15_3730 at 3951.800 kb on + strand, within HP15_3730 at 3951.808 kb on - strand, within HP15_3730 at 3951.851 kb on + strand, within HP15_3730 at 3951.866 kb on + strand, within HP15_3730 at 3952.125 kb on - strand, within HP15_3730 at 3952.173 kb on + strand, within HP15_3730 at 3952.173 kb on + strand, within HP15_3730 at 3952.173 kb on + strand, within HP15_3730 at 3952.173 kb on + strand, within HP15_3730 at 3952.181 kb on - strand, within HP15_3730 at 3952.181 kb on - strand, within HP15_3730 at 3952.181 kb on - strand, within HP15_3730 at 3952.181 kb on - strand, within HP15_3730 at 3952.188 kb on + strand, within HP15_3730 at 3952.196 kb on - strand, within HP15_3730 at 3952.196 kb on - strand, within HP15_3730 at 3952.337 kb on - strand at 3952.594 kb on - strand at 3952.601 kb on - strand at 3952.834 kb on + strand, within HP15_3731 at 3952.900 kb on + strand, within HP15_3731 at 3952.908 kb on - strand, within HP15_3731 at 3952.908 kb on - strand, within HP15_3731 at 3952.933 kb on + strand, within HP15_3731 at 3952.983 kb on - strand, within HP15_3731 at 3953.029 kb on + strand, within HP15_3731 at 3953.089 kb on - strand, within HP15_3731 at 3953.094 kb on - strand, within HP15_3731 at 3953.124 kb on - strand, within HP15_3731 at 3953.171 kb on - strand, within HP15_3731 at 3953.213 kb on - strand, within HP15_3731 at 3953.213 kb on - strand, within HP15_3731 at 3953.245 kb on - strand, within HP15_3731 at 3953.396 kb on + strand, within HP15_3731 at 3953.431 kb on + strand, within HP15_3731 at 3953.451 kb on + strand, within HP15_3731 at 3953.480 kb on + strand, within HP15_3731 at 3953.590 kb on + strand, within HP15_3731 at 3953.598 kb on - strand, within HP15_3731 at 3953.610 kb on - strand, within HP15_3731 at 3953.637 kb on - strand, within HP15_3731 at 3953.771 kb on + strand at 3953.824 kb on + strand at 3953.824 kb on + strand at 3953.824 kb on - strand at 3953.845 kb on + strand at 3954.221 kb on - strand, within HP15_3732 at 3954.280 kb on + strand, within HP15_3732 at 3954.342 kb on + strand, within HP15_3732 at 3954.375 kb on - strand, within HP15_3732 at 3954.375 kb on - strand, within HP15_3732 at 3954.382 kb on - strand, within HP15_3732 at 3954.387 kb on + strand, within HP15_3732 at 3954.540 kb on - strand, within HP15_3732 at 3954.540 kb on - strand, within HP15_3732 at 3954.560 kb on + strand, within HP15_3732 at 3954.560 kb on + strand, within HP15_3732 at 3954.568 kb on - strand, within HP15_3732 at 3954.568 kb on - strand, within HP15_3732 at 3954.568 kb on - strand, within HP15_3732 at 3954.588 kb on + strand, within HP15_3732 at 3954.685 kb on - strand, within HP15_3732 at 3954.701 kb on + strand, within HP15_3732 at 3954.777 kb on - strand, within HP15_3732
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.29 mg/ml remove 3,951,556 - HP15_3730 0.45 +0.2 3,951,557 + HP15_3730 0.45 +1.3 3,951,588 + HP15_3730 0.47 +0.8 3,951,596 - HP15_3730 0.47 -0.2 3,951,596 - HP15_3730 0.47 -0.0 3,951,677 + HP15_3730 0.53 +1.0 3,951,679 + HP15_3730 0.53 -0.1 3,951,685 - HP15_3730 0.53 +1.8 3,951,687 - HP15_3730 0.53 -0.7 3,951,697 - HP15_3730 0.54 +0.5 3,951,718 - HP15_3730 0.55 +0.8 3,951,727 - HP15_3730 0.56 +0.5 3,951,800 + HP15_3730 0.61 -0.0 3,951,808 - HP15_3730 0.61 -0.4 3,951,851 + HP15_3730 0.64 +0.5 3,951,866 + HP15_3730 0.65 -0.4 3,952,125 - HP15_3730 0.82 +0.6 3,952,173 + HP15_3730 0.85 -0.4 3,952,173 + HP15_3730 0.85 +0.5 3,952,173 + HP15_3730 0.85 +0.0 3,952,173 + HP15_3730 0.85 -0.2 3,952,181 - HP15_3730 0.85 -0.2 3,952,181 - HP15_3730 0.85 -0.1 3,952,181 - HP15_3730 0.85 -0.9 3,952,181 - HP15_3730 0.85 -0.7 3,952,188 + HP15_3730 0.86 +0.4 3,952,196 - HP15_3730 0.86 +0.5 3,952,196 - HP15_3730 0.86 -0.1 3,952,337 - +0.4 3,952,594 - +1.1 3,952,601 - +0.7 3,952,834 + HP15_3731 0.23 -0.7 3,952,900 + HP15_3731 0.28 -0.3 3,952,908 - HP15_3731 0.28 -0.1 3,952,908 - HP15_3731 0.28 -0.4 3,952,933 + HP15_3731 0.30 -0.7 3,952,983 - HP15_3731 0.34 +0.5 3,953,029 + HP15_3731 0.38 -1.1 3,953,089 - HP15_3731 0.43 -0.1 3,953,094 - HP15_3731 0.43 +0.4 3,953,124 - HP15_3731 0.45 -1.3 3,953,171 - HP15_3731 0.49 -0.1 3,953,213 - HP15_3731 0.52 -0.4 3,953,213 - HP15_3731 0.52 +0.2 3,953,245 - HP15_3731 0.55 -0.1 3,953,396 + HP15_3731 0.67 +0.4 3,953,431 + HP15_3731 0.70 +0.2 3,953,451 + HP15_3731 0.71 -0.6 3,953,480 + HP15_3731 0.74 +0.5 3,953,590 + HP15_3731 0.82 +0.3 3,953,598 - HP15_3731 0.83 -0.1 3,953,610 - HP15_3731 0.84 +0.4 3,953,637 - HP15_3731 0.86 -0.5 3,953,771 + +0.2 3,953,824 + +0.4 3,953,824 + -0.9 3,953,824 - +0.2 3,953,845 + -0.4 3,954,221 - HP15_3732 0.14 +0.5 3,954,280 + HP15_3732 0.20 -0.5 3,954,342 + HP15_3732 0.27 -2.2 3,954,375 - HP15_3732 0.31 -1.5 3,954,375 - HP15_3732 0.31 -0.2 3,954,382 - HP15_3732 0.31 +0.2 3,954,387 + HP15_3732 0.32 +0.7 3,954,540 - HP15_3732 0.49 +0.7 3,954,540 - HP15_3732 0.49 +0.0 3,954,560 + HP15_3732 0.51 +1.0 3,954,560 + HP15_3732 0.51 -0.1 3,954,568 - HP15_3732 0.52 +0.3 3,954,568 - HP15_3732 0.52 +0.8 3,954,568 - HP15_3732 0.52 -1.8 3,954,588 + HP15_3732 0.54 +0.4 3,954,685 - HP15_3732 0.65 +0.2 3,954,701 + HP15_3732 0.66 +0.6 3,954,777 - HP15_3732 0.75 +2.4
Or see this region's nucleotide sequence