Experiment: m.b. benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3011 and HP15_3012 are separated by 35 nucleotides HP15_3012 and HP15_3013 are separated by 138 nucleotides HP15_3013 and HP15_3014 are separated by 193 nucleotides
HP15_3011: HP15_3011 - imidazole glycerol phosphate synthase subunit HisH, at 3,155,813 to 3,156,490
_3011
HP15_3012: HP15_3012 - imidazoleglycerol-phosphate dehydratase, at 3,156,526 to 3,157,119
_3012
HP15_3013: HP15_3013 - conserved hypothetical protein, at 3,157,258 to 3,157,719
_3013
HP15_3014: HP15_3014 - AsmA family protein, at 3,157,913 to 3,160,078
_3014
Position (kb)
3157
3158 Strain fitness (log2 ratio)
-1
0
1 at 3156.504 kb on - strand at 3157.365 kb on - strand, within HP15_3013 at 3157.376 kb on - strand, within HP15_3013 at 3157.445 kb on + strand, within HP15_3013 at 3157.521 kb on - strand, within HP15_3013 at 3157.690 kb on + strand at 3157.722 kb on - strand at 3157.745 kb on - strand at 3157.834 kb on + strand at 3157.842 kb on - strand at 3157.850 kb on + strand at 3157.952 kb on - strand at 3158.046 kb on + strand at 3158.097 kb on + strand at 3158.111 kb on - strand at 3158.167 kb on + strand, within HP15_3014 at 3158.205 kb on + strand, within HP15_3014 at 3158.221 kb on - strand, within HP15_3014 at 3158.428 kb on - strand, within HP15_3014
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.29 mg/ml remove 3,156,504 - -0.2 3,157,365 - HP15_3013 0.23 -0.3 3,157,376 - HP15_3013 0.26 +0.5 3,157,445 + HP15_3013 0.40 +0.1 3,157,521 - HP15_3013 0.57 +0.7 3,157,690 + -0.1 3,157,722 - -1.5 3,157,745 - +0.4 3,157,834 + +0.6 3,157,842 - -0.2 3,157,850 + +0.6 3,157,952 - +0.9 3,158,046 + +0.2 3,158,097 + +0.9 3,158,111 - +0.7 3,158,167 + HP15_3014 0.12 -0.0 3,158,205 + HP15_3014 0.13 -0.2 3,158,221 - HP15_3014 0.14 -0.9 3,158,428 - HP15_3014 0.24 -1.6
Or see this region's nucleotide sequence