Experiment: m.b. benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2597 and HP15_2598 are separated by 18 nucleotides HP15_2598 and HP15_2599 are separated by 1 nucleotides
HP15_2597: HP15_2597 - two component, sigma54 specific, transcriptional regulator, Fis family, at 2,745,000 to 2,746,904
_2597
HP15_2598: HP15_2598 - isopropylmalate isomerase small subunit, at 2,746,923 to 2,747,558
_2598
HP15_2599: HP15_2599 - isopropylmalate isomerase large subunit, at 2,747,560 to 2,748,969
_2599
Position (kb)
2746
2747
2748 Strain fitness (log2 ratio)
-1
0
1
2 at 2745.933 kb on - strand, within HP15_2597 at 2746.000 kb on + strand, within HP15_2597 at 2746.085 kb on - strand, within HP15_2597 at 2746.087 kb on - strand, within HP15_2597 at 2746.092 kb on - strand, within HP15_2597 at 2746.227 kb on + strand, within HP15_2597 at 2746.227 kb on + strand, within HP15_2597 at 2746.286 kb on + strand, within HP15_2597 at 2746.307 kb on - strand, within HP15_2597 at 2746.442 kb on + strand, within HP15_2597 at 2746.477 kb on + strand, within HP15_2597 at 2746.549 kb on + strand, within HP15_2597 at 2746.552 kb on - strand, within HP15_2597 at 2746.552 kb on - strand, within HP15_2597 at 2746.557 kb on + strand, within HP15_2597 at 2746.565 kb on + strand, within HP15_2597 at 2746.573 kb on - strand, within HP15_2597 at 2746.644 kb on + strand, within HP15_2597 at 2746.729 kb on + strand at 2746.752 kb on + strand at 2746.758 kb on - strand at 2746.849 kb on - strand at 2746.940 kb on + strand at 2746.963 kb on + strand at 2747.005 kb on + strand, within HP15_2598 at 2747.111 kb on + strand, within HP15_2598 at 2747.111 kb on + strand, within HP15_2598 at 2747.111 kb on + strand, within HP15_2598 at 2747.119 kb on - strand, within HP15_2598 at 2747.311 kb on - strand, within HP15_2598 at 2747.334 kb on + strand, within HP15_2598 at 2747.334 kb on + strand, within HP15_2598 at 2747.342 kb on - strand, within HP15_2598 at 2747.389 kb on + strand, within HP15_2598 at 2747.449 kb on - strand, within HP15_2598 at 2747.489 kb on - strand, within HP15_2598 at 2747.494 kb on - strand, within HP15_2598 at 2747.499 kb on + strand at 2747.521 kb on + strand at 2747.552 kb on + strand at 2747.642 kb on + strand at 2747.642 kb on + strand at 2747.650 kb on - strand at 2747.699 kb on + strand at 2747.707 kb on - strand, within HP15_2599 at 2747.834 kb on + strand, within HP15_2599 at 2747.956 kb on + strand, within HP15_2599 at 2747.989 kb on + strand, within HP15_2599 at 2747.997 kb on - strand, within HP15_2599 at 2748.192 kb on - strand, within HP15_2599 at 2748.211 kb on + strand, within HP15_2599 at 2748.225 kb on - strand, within HP15_2599 at 2748.231 kb on - strand, within HP15_2599 at 2748.327 kb on + strand, within HP15_2599 at 2748.327 kb on + strand, within HP15_2599 at 2748.427 kb on + strand, within HP15_2599 at 2748.451 kb on - strand, within HP15_2599 at 2748.471 kb on + strand, within HP15_2599
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.29 mg/ml remove 2,745,933 - HP15_2597 0.49 +0.3 2,746,000 + HP15_2597 0.52 +0.0 2,746,085 - HP15_2597 0.57 +0.1 2,746,087 - HP15_2597 0.57 -1.1 2,746,092 - HP15_2597 0.57 +0.6 2,746,227 + HP15_2597 0.64 +0.6 2,746,227 + HP15_2597 0.64 +0.5 2,746,286 + HP15_2597 0.68 +0.3 2,746,307 - HP15_2597 0.69 -0.4 2,746,442 + HP15_2597 0.76 +0.5 2,746,477 + HP15_2597 0.78 +1.1 2,746,549 + HP15_2597 0.81 +0.1 2,746,552 - HP15_2597 0.81 -0.6 2,746,552 - HP15_2597 0.81 +0.3 2,746,557 + HP15_2597 0.82 +0.2 2,746,565 + HP15_2597 0.82 -0.0 2,746,573 - HP15_2597 0.83 -0.6 2,746,644 + HP15_2597 0.86 +0.6 2,746,729 + +0.5 2,746,752 + +0.3 2,746,758 - -1.0 2,746,849 - +0.0 2,746,940 + +0.0 2,746,963 + +0.3 2,747,005 + HP15_2598 0.13 +0.5 2,747,111 + HP15_2598 0.30 -0.2 2,747,111 + HP15_2598 0.30 +1.3 2,747,111 + HP15_2598 0.30 -0.0 2,747,119 - HP15_2598 0.31 +0.2 2,747,311 - HP15_2598 0.61 -0.2 2,747,334 + HP15_2598 0.65 +2.0 2,747,334 + HP15_2598 0.65 +0.4 2,747,342 - HP15_2598 0.66 -0.5 2,747,389 + HP15_2598 0.73 +1.8 2,747,449 - HP15_2598 0.83 -0.1 2,747,489 - HP15_2598 0.89 +0.6 2,747,494 - HP15_2598 0.90 +0.8 2,747,499 + -0.0 2,747,521 + +0.0 2,747,552 + -0.5 2,747,642 + -0.3 2,747,642 + -0.8 2,747,650 - -0.4 2,747,699 + +0.8 2,747,707 - HP15_2599 0.10 +0.1 2,747,834 + HP15_2599 0.19 +0.1 2,747,956 + HP15_2599 0.28 +0.5 2,747,989 + HP15_2599 0.30 +1.4 2,747,997 - HP15_2599 0.31 +0.4 2,748,192 - HP15_2599 0.45 -1.2 2,748,211 + HP15_2599 0.46 -0.0 2,748,225 - HP15_2599 0.47 +1.5 2,748,231 - HP15_2599 0.48 -0.0 2,748,327 + HP15_2599 0.54 +0.2 2,748,327 + HP15_2599 0.54 -0.9 2,748,427 + HP15_2599 0.61 -0.4 2,748,451 - HP15_2599 0.63 +0.1 2,748,471 + HP15_2599 0.65 +1.8
Or see this region's nucleotide sequence