Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2415

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2413 and Psest_2414 overlap by 1 nucleotidesPsest_2414 and Psest_2415 are separated by 11 nucleotidesPsest_2415 and Psest_2416 are separated by 67 nucleotides Psest_2413: Psest_2413 - Periplasmic protein TonB, links inner and outer membranes, at 2,573,155 to 2,573,943 _2413 Psest_2414: Psest_2414 - TolR protein, at 2,573,943 to 2,574,407 _2414 Psest_2415: Psest_2415 - TolQ protein, at 2,574,419 to 2,575,132 _2415 Psest_2416: Psest_2416 - 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase), at 2,575,200 to 2,577,116 _2416 Position (kb) 2574 2575 2576Strain fitness (log2 ratio) -2 -1 0 1 2at 2574.070 kb on + strand, within Psest_2414at 2574.071 kb on - strand, within Psest_2414at 2574.187 kb on + strand, within Psest_2414at 2574.187 kb on + strand, within Psest_2414at 2574.188 kb on - strand, within Psest_2414at 2574.188 kb on - strand, within Psest_2414at 2574.350 kb on - strand, within Psest_2414at 2574.357 kb on + strand, within Psest_2414at 2574.357 kb on + strand, within Psest_2414at 2574.357 kb on + strand, within Psest_2414at 2574.358 kb on - strand, within Psest_2414at 2574.358 kb on - strand, within Psest_2414at 2574.499 kb on - strand, within Psest_2415at 2574.544 kb on - strand, within Psest_2415at 2574.544 kb on - strand, within Psest_2415at 2574.700 kb on + strand, within Psest_2415at 2574.702 kb on + strand, within Psest_2415at 2574.702 kb on + strand, within Psest_2415at 2574.702 kb on + strand, within Psest_2415at 2574.703 kb on - strand, within Psest_2415at 2574.703 kb on - strand, within Psest_2415at 2574.703 kb on - strand, within Psest_2415at 2574.780 kb on + strand, within Psest_2415at 2575.023 kb on + strand, within Psest_2415at 2575.166 kb on + strandat 2575.243 kb on + strandat 2575.243 kb on + strandat 2575.243 kb on + strandat 2575.243 kb on + strandat 2575.243 kb on + strandat 2575.244 kb on - strandat 2575.244 kb on - strandat 2575.244 kb on - strandat 2575.249 kb on + strandat 2575.249 kb on + strandat 2575.249 kb on + strandat 2575.420 kb on + strand, within Psest_2416at 2575.447 kb on + strand, within Psest_2416at 2575.447 kb on + strand, within Psest_2416at 2575.447 kb on + strand, within Psest_2416at 2575.448 kb on - strand, within Psest_2416at 2575.448 kb on - strand, within Psest_2416at 2575.448 kb on - strand, within Psest_2416at 2575.480 kb on + strand, within Psest_2416at 2575.529 kb on - strand, within Psest_2416at 2575.771 kb on + strand, within Psest_2416at 2575.772 kb on - strand, within Psest_2416at 2575.810 kb on + strand, within Psest_2416at 2575.810 kb on + strand, within Psest_2416at 2575.811 kb on - strand, within Psest_2416at 2575.811 kb on - strand, within Psest_2416at 2575.811 kb on - strand, within Psest_2416at 2576.020 kb on + strand, within Psest_2416

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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2,574,070 + Psest_2414 0.27 +0.8
2,574,071 - Psest_2414 0.28 -1.2
2,574,187 + Psest_2414 0.52 -0.2
2,574,187 + Psest_2414 0.52 +0.2
2,574,188 - Psest_2414 0.53 -1.5
2,574,188 - Psest_2414 0.53 -0.2
2,574,350 - Psest_2414 0.88 -0.5
2,574,357 + Psest_2414 0.89 -0.3
2,574,357 + Psest_2414 0.89 -2.6
2,574,357 + Psest_2414 0.89 -0.2
2,574,358 - Psest_2414 0.89 -0.6
2,574,358 - Psest_2414 0.89 -1.6
2,574,499 - Psest_2415 0.11 +0.3
2,574,544 - Psest_2415 0.18 +1.6
2,574,544 - Psest_2415 0.18 +0.8
2,574,700 + Psest_2415 0.39 -1.0
2,574,702 + Psest_2415 0.40 +0.1
2,574,702 + Psest_2415 0.40 -0.1
2,574,702 + Psest_2415 0.40 -0.2
2,574,703 - Psest_2415 0.40 -0.2
2,574,703 - Psest_2415 0.40 +0.3
2,574,703 - Psest_2415 0.40 -0.4
2,574,780 + Psest_2415 0.51 +0.4
2,575,023 + Psest_2415 0.85 -0.2
2,575,166 + +1.8
2,575,243 + +0.0
2,575,243 + -0.7
2,575,243 + +1.4
2,575,243 + -0.8
2,575,243 + +0.0
2,575,244 - -1.7
2,575,244 - -1.1
2,575,244 - +0.3
2,575,249 + -0.9
2,575,249 + +0.1
2,575,249 + -2.0
2,575,420 + Psest_2416 0.11 +0.1
2,575,447 + Psest_2416 0.13 -0.7
2,575,447 + Psest_2416 0.13 -0.2
2,575,447 + Psest_2416 0.13 -1.2
2,575,448 - Psest_2416 0.13 -0.7
2,575,448 - Psest_2416 0.13 -0.2
2,575,448 - Psest_2416 0.13 +0.8
2,575,480 + Psest_2416 0.15 -0.7
2,575,529 - Psest_2416 0.17 -0.7
2,575,771 + Psest_2416 0.30 +2.2
2,575,772 - Psest_2416 0.30 +1.0
2,575,810 + Psest_2416 0.32 -0.3
2,575,810 + Psest_2416 0.32 +0.5
2,575,811 - Psest_2416 0.32 -1.2
2,575,811 - Psest_2416 0.32 -0.4
2,575,811 - Psest_2416 0.32 +0.3
2,576,020 + Psest_2416 0.43 +0.3

Or see this region's nucleotide sequence