Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0225 and Psest_0226 are separated by 29 nucleotides Psest_0226 and Psest_0227 overlap by 8 nucleotides
Psest_0225: Psest_0225 - Predicted permease, DMT superfamily, at 233,672 to 234,583
_0225
Psest_0226: Psest_0226 - Domain of unknown function (DUF3482)./GTPase of unknown function., at 234,613 to 235,986
_0226
Psest_0227: Psest_0227 - Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific, at 235,979 to 237,373
_0227
Position (kb) 234
235
236 Strain fitness (log2 ratio) -2
-1
0
1
2 at 233.680 kb on + strand at 233.680 kb on + strand at 233.680 kb on + strand at 233.681 kb on - strand at 233.681 kb on - strand at 233.681 kb on - strand at 233.681 kb on - strand at 233.750 kb on + strand at 233.750 kb on + strand at 233.750 kb on + strand at 233.750 kb on + strand at 233.750 kb on + strand at 233.750 kb on + strand at 233.750 kb on + strand at 233.750 kb on + strand at 233.750 kb on + strand at 233.750 kb on + strand at 234.108 kb on + strand, within Psest_0225 at 234.108 kb on + strand, within Psest_0225 at 234.109 kb on - strand, within Psest_0225 at 234.109 kb on - strand, within Psest_0225 at 234.321 kb on - strand, within Psest_0225 at 234.582 kb on - strand at 234.924 kb on - strand, within Psest_0226 at 235.073 kb on - strand, within Psest_0226 at 235.161 kb on - strand, within Psest_0226 at 235.161 kb on - strand, within Psest_0226 at 235.590 kb on - strand, within Psest_0226 at 235.590 kb on - strand, within Psest_0226 at 235.590 kb on - strand, within Psest_0226 at 235.590 kb on - strand, within Psest_0226 at 235.590 kb on - strand, within Psest_0226 at 235.625 kb on + strand, within Psest_0226 at 235.626 kb on - strand, within Psest_0226 at 235.626 kb on - strand, within Psest_0226 at 235.626 kb on - strand, within Psest_0226 at 235.626 kb on - strand, within Psest_0226 at 235.769 kb on + strand, within Psest_0226 at 236.105 kb on + strand at 236.562 kb on + strand, within Psest_0227 at 236.562 kb on + strand, within Psest_0227 at 236.563 kb on - strand, within Psest_0227 at 236.563 kb on - strand, within Psest_0227 at 236.563 kb on - strand, within Psest_0227 at 236.791 kb on + strand, within Psest_0227 at 236.791 kb on + strand, within Psest_0227 at 236.791 kb on + strand, within Psest_0227 at 236.792 kb on - strand, within Psest_0227 at 236.831 kb on + strand, within Psest_0227 at 236.843 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 233,680 + +0.6 233,680 + +0.5 233,680 + +0.5 233,681 - -0.5 233,681 - -0.4 233,681 - -0.1 233,681 - +0.5 233,750 + -1.4 233,750 + +0.5 233,750 + +0.5 233,750 + -0.8 233,750 + -0.9 233,750 + +0.5 233,750 + +0.5 233,750 + +0.5 233,750 + -0.7 233,750 + +0.4 234,108 + Psest_0225 0.48 +1.5 234,108 + Psest_0225 0.48 -0.5 234,109 - Psest_0225 0.48 -0.7 234,109 - Psest_0225 0.48 -0.1 234,321 - Psest_0225 0.71 -0.4 234,582 - -0.3 234,924 - Psest_0226 0.23 +0.5 235,073 - Psest_0226 0.33 -0.9 235,161 - Psest_0226 0.40 -2.6 235,161 - Psest_0226 0.40 +0.9 235,590 - Psest_0226 0.71 +0.5 235,590 - Psest_0226 0.71 -1.1 235,590 - Psest_0226 0.71 -0.1 235,590 - Psest_0226 0.71 -0.5 235,590 - Psest_0226 0.71 -0.1 235,625 + Psest_0226 0.74 -1.3 235,626 - Psest_0226 0.74 +0.3 235,626 - Psest_0226 0.74 +1.5 235,626 - Psest_0226 0.74 +1.5 235,626 - Psest_0226 0.74 +0.7 235,769 + Psest_0226 0.84 -0.7 236,105 + +0.7 236,562 + Psest_0227 0.42 +0.9 236,562 + Psest_0227 0.42 +1.5 236,563 - Psest_0227 0.42 +2.5 236,563 - Psest_0227 0.42 +1.3 236,563 - Psest_0227 0.42 -0.5 236,791 + Psest_0227 0.58 +0.5 236,791 + Psest_0227 0.58 +0.5 236,791 + Psest_0227 0.58 -0.1 236,792 - Psest_0227 0.58 +0.3 236,831 + Psest_0227 0.61 +0.5 236,843 + +1.5
Or see this region's nucleotide sequence