Experiment: m.b. benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1915 and HP15_1916 overlap by 4 nucleotides HP15_1916 and HP15_1917 are separated by 0 nucleotides
HP15_1915: HP15_1915 - glycosyl transferase, group 1, at 2,029,817 to 2,030,968
_1915
HP15_1916: HP15_1916 - O-antigen polymerase, at 2,030,965 to 2,032,335
_1916
HP15_1917: HP15_1917 - glycosyl transferase, family 2, at 2,032,336 to 2,033,511
_1917
Position (kb)
2030
2031
2032
2033 Strain fitness (log2 ratio)
-2
-1
0
1 at 2030.029 kb on - strand, within HP15_1915 at 2030.228 kb on - strand, within HP15_1915 at 2030.271 kb on + strand, within HP15_1915 at 2030.285 kb on + strand, within HP15_1915 at 2030.300 kb on - strand, within HP15_1915 at 2030.530 kb on - strand, within HP15_1915 at 2030.531 kb on + strand, within HP15_1915 at 2030.562 kb on + strand, within HP15_1915 at 2030.587 kb on + strand, within HP15_1915 at 2030.612 kb on + strand, within HP15_1915 at 2030.698 kb on - strand at 2030.714 kb on + strand, within HP15_1915 at 2030.812 kb on - strand, within HP15_1915 at 2030.832 kb on - strand, within HP15_1915 at 2030.917 kb on - strand at 2031.237 kb on - strand, within HP15_1916 at 2031.324 kb on + strand, within HP15_1916 at 2031.327 kb on - strand, within HP15_1916 at 2031.418 kb on + strand, within HP15_1916 at 2031.438 kb on + strand, within HP15_1916 at 2031.600 kb on - strand, within HP15_1916 at 2031.607 kb on - strand, within HP15_1916 at 2031.607 kb on - strand, within HP15_1916 at 2031.698 kb on - strand, within HP15_1916 at 2031.698 kb on - strand, within HP15_1916 at 2031.798 kb on - strand, within HP15_1916 at 2031.798 kb on - strand, within HP15_1916 at 2031.848 kb on + strand, within HP15_1916 at 2031.913 kb on + strand, within HP15_1916 at 2031.913 kb on - strand, within HP15_1916 at 2032.163 kb on + strand, within HP15_1916 at 2032.356 kb on + strand at 2032.366 kb on + strand at 2032.366 kb on + strand at 2032.366 kb on + strand at 2032.397 kb on + strand at 2032.509 kb on + strand, within HP15_1917 at 2032.517 kb on - strand, within HP15_1917 at 2032.517 kb on - strand, within HP15_1917 at 2032.693 kb on - strand, within HP15_1917 at 2033.160 kb on - strand, within HP15_1917 at 2033.210 kb on - strand, within HP15_1917
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.29 mg/ml remove 2,030,029 - HP15_1915 0.18 +0.5 2,030,228 - HP15_1915 0.36 +1.4 2,030,271 + HP15_1915 0.39 +0.1 2,030,285 + HP15_1915 0.41 -0.2 2,030,300 - HP15_1915 0.42 -0.4 2,030,530 - HP15_1915 0.62 -0.2 2,030,531 + HP15_1915 0.62 +0.8 2,030,562 + HP15_1915 0.65 +0.2 2,030,587 + HP15_1915 0.67 +0.5 2,030,612 + HP15_1915 0.69 -1.1 2,030,698 - +0.9 2,030,714 + HP15_1915 0.78 +0.6 2,030,812 - HP15_1915 0.86 -0.7 2,030,832 - HP15_1915 0.88 -0.2 2,030,917 - -0.6 2,031,237 - HP15_1916 0.20 -0.5 2,031,324 + HP15_1916 0.26 -0.3 2,031,327 - HP15_1916 0.26 -0.1 2,031,418 + HP15_1916 0.33 +0.0 2,031,438 + HP15_1916 0.35 +0.2 2,031,600 - HP15_1916 0.46 -0.2 2,031,607 - HP15_1916 0.47 -0.4 2,031,607 - HP15_1916 0.47 +0.3 2,031,698 - HP15_1916 0.53 -0.0 2,031,698 - HP15_1916 0.53 -0.7 2,031,798 - HP15_1916 0.61 -0.5 2,031,798 - HP15_1916 0.61 -1.2 2,031,848 + HP15_1916 0.64 +0.7 2,031,913 + HP15_1916 0.69 -1.2 2,031,913 - HP15_1916 0.69 +0.2 2,032,163 + HP15_1916 0.87 -0.2 2,032,356 + -0.9 2,032,366 + +0.2 2,032,366 + +0.2 2,032,366 + +0.5 2,032,397 + -0.6 2,032,509 + HP15_1917 0.15 -2.3 2,032,517 - HP15_1917 0.15 -0.9 2,032,517 - HP15_1917 0.15 -0.1 2,032,693 - HP15_1917 0.30 -0.3 2,033,160 - HP15_1917 0.70 -0.2 2,033,210 - HP15_1917 0.74 -0.4
Or see this region's nucleotide sequence