Experiment: m.b. benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1033 and HP15_1034 are separated by 150 nucleotides HP15_1034 and HP15_1035 are separated by 102 nucleotides
HP15_1033: HP15_1033 - flavoprotein, NADB Rossmann superfamily, at 1,051,461 to 1,052,642
_1033
HP15_1034: HP15_1034 - Zn-dependent alcohol dehydrogenase, at 1,052,793 to 1,053,851
_1034
HP15_1035: HP15_1035 - phenazine biosynthesis protein, PhzF family, at 1,053,954 to 1,054,757
_1035
Position (kb)
1052
1053
1054 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1051.793 kb on - strand, within HP15_1033 at 1051.798 kb on - strand, within HP15_1033 at 1051.798 kb on - strand, within HP15_1033 at 1051.887 kb on + strand, within HP15_1033 at 1051.933 kb on + strand, within HP15_1033 at 1052.071 kb on - strand, within HP15_1033 at 1052.077 kb on - strand, within HP15_1033 at 1052.187 kb on + strand, within HP15_1033 at 1052.397 kb on + strand, within HP15_1033 at 1052.410 kb on - strand, within HP15_1033 at 1052.415 kb on - strand, within HP15_1033 at 1052.555 kb on - strand at 1052.584 kb on + strand at 1052.589 kb on + strand at 1052.589 kb on + strand at 1052.589 kb on + strand at 1052.589 kb on + strand at 1052.592 kb on - strand at 1052.597 kb on - strand at 1052.646 kb on - strand at 1052.646 kb on - strand at 1052.646 kb on - strand at 1052.698 kb on + strand at 1052.784 kb on + strand at 1052.861 kb on + strand at 1052.878 kb on - strand at 1053.177 kb on - strand, within HP15_1034 at 1053.354 kb on + strand, within HP15_1034 at 1053.370 kb on + strand, within HP15_1034 at 1053.370 kb on + strand, within HP15_1034 at 1053.448 kb on - strand, within HP15_1034 at 1053.497 kb on - strand, within HP15_1034 at 1053.504 kb on + strand, within HP15_1034 at 1053.531 kb on - strand, within HP15_1034 at 1053.608 kb on + strand, within HP15_1034 at 1053.645 kb on - strand, within HP15_1034 at 1053.803 kb on + strand at 1053.941 kb on + strand at 1054.070 kb on + strand, within HP15_1035 at 1054.204 kb on + strand, within HP15_1035 at 1054.222 kb on - strand, within HP15_1035 at 1054.232 kb on + strand, within HP15_1035 at 1054.255 kb on - strand, within HP15_1035 at 1054.286 kb on + strand, within HP15_1035 at 1054.341 kb on + strand, within HP15_1035 at 1054.341 kb on + strand, within HP15_1035 at 1054.349 kb on - strand, within HP15_1035 at 1054.351 kb on + strand, within HP15_1035 at 1054.394 kb on - strand, within HP15_1035 at 1054.502 kb on - strand, within HP15_1035 at 1054.511 kb on - strand, within HP15_1035 at 1054.515 kb on + strand, within HP15_1035 at 1054.546 kb on + strand, within HP15_1035 at 1054.564 kb on - strand, within HP15_1035 at 1054.564 kb on - strand, within HP15_1035 at 1054.733 kb on - strand at 1054.747 kb on + strand at 1054.761 kb on - strand at 1054.838 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.29 mg/ml remove 1,051,793 - HP15_1033 0.28 +0.8 1,051,798 - HP15_1033 0.29 +0.9 1,051,798 - HP15_1033 0.29 +0.3 1,051,887 + HP15_1033 0.36 +0.2 1,051,933 + HP15_1033 0.40 -0.0 1,052,071 - HP15_1033 0.52 +0.0 1,052,077 - HP15_1033 0.52 +0.7 1,052,187 + HP15_1033 0.61 +0.6 1,052,397 + HP15_1033 0.79 -1.3 1,052,410 - HP15_1033 0.80 -0.1 1,052,415 - HP15_1033 0.81 -1.8 1,052,555 - +0.6 1,052,584 + -0.9 1,052,589 + -0.1 1,052,589 + -2.9 1,052,589 + +0.1 1,052,589 + -0.0 1,052,592 - +0.9 1,052,597 - -0.1 1,052,646 - +2.0 1,052,646 - -0.1 1,052,646 - +0.1 1,052,698 + +0.5 1,052,784 + +2.4 1,052,861 + +0.2 1,052,878 - -0.2 1,053,177 - HP15_1034 0.36 +0.7 1,053,354 + HP15_1034 0.53 -0.1 1,053,370 + HP15_1034 0.54 +0.9 1,053,370 + HP15_1034 0.54 -0.4 1,053,448 - HP15_1034 0.62 +1.5 1,053,497 - HP15_1034 0.66 +0.1 1,053,504 + HP15_1034 0.67 -0.3 1,053,531 - HP15_1034 0.70 +0.1 1,053,608 + HP15_1034 0.77 -0.1 1,053,645 - HP15_1034 0.80 +1.0 1,053,803 + -0.4 1,053,941 + -0.1 1,054,070 + HP15_1035 0.14 -0.6 1,054,204 + HP15_1035 0.31 +0.1 1,054,222 - HP15_1035 0.33 -0.7 1,054,232 + HP15_1035 0.35 +2.2 1,054,255 - HP15_1035 0.37 +0.8 1,054,286 + HP15_1035 0.41 -0.3 1,054,341 + HP15_1035 0.48 -0.8 1,054,341 + HP15_1035 0.48 +0.5 1,054,349 - HP15_1035 0.49 +0.0 1,054,351 + HP15_1035 0.49 -0.0 1,054,394 - HP15_1035 0.55 +0.8 1,054,502 - HP15_1035 0.68 +0.3 1,054,511 - HP15_1035 0.69 +0.3 1,054,515 + HP15_1035 0.70 -0.2 1,054,546 + HP15_1035 0.74 -0.8 1,054,564 - HP15_1035 0.76 +1.7 1,054,564 - HP15_1035 0.76 +0.2 1,054,733 - -0.5 1,054,747 + +0.5 1,054,761 - +0.2 1,054,838 - +0.0
Or see this region's nucleotide sequence