Strain Fitness in Dechlorosoma suillum PS around Dsui_3494

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3492 and Dsui_3493 are separated by 278 nucleotidesDsui_3493 and Dsui_3494 are separated by 1 nucleotidesDsui_3494 and Dsui_3495 are separated by 83 nucleotidesDsui_3495 and Dsui_3496 overlap by 1 nucleotides Dsui_3492: Dsui_3492 - Tfp pilus assembly protein, tip-associated adhesin PilY1, at 3,755,518 to 3,759,021 _3492 Dsui_3493: Dsui_3493 - Gram-negative bacterial tonB protein, at 3,759,300 to 3,759,743 _3493 Dsui_3494: Dsui_3494 - (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase, at 3,759,745 to 3,760,674 _3494 Dsui_3495: Dsui_3495 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 3,760,758 to 3,761,201 _3495 Dsui_3496: Dsui_3496 - sulfite oxidase-like oxidoreductase, at 3,761,201 to 3,761,761 _3496 Position (kb) 3759 3760 3761Strain fitness (log2 ratio) -1 0 1 2 3at 3758.762 kb on + strandat 3758.802 kb on - strandat 3758.888 kb on - strandat 3758.899 kb on + strandat 3759.085 kb on - strandat 3759.097 kb on + strandat 3759.128 kb on - strandat 3759.251 kb on - strandat 3759.263 kb on + strandat 3759.271 kb on - strandat 3759.271 kb on - strandat 3759.374 kb on - strand, within Dsui_3493at 3759.445 kb on - strand, within Dsui_3493at 3759.547 kb on + strand, within Dsui_3493at 3759.547 kb on - strand, within Dsui_3493at 3759.552 kb on - strand, within Dsui_3493at 3759.565 kb on - strand, within Dsui_3493at 3759.634 kb on - strand, within Dsui_3493at 3759.675 kb on + strand, within Dsui_3493at 3759.675 kb on + strand, within Dsui_3493at 3761.125 kb on - strand, within Dsui_3495at 3761.179 kb on - strandat 3761.254 kb on + strandat 3761.327 kb on + strandat 3761.444 kb on + strand, within Dsui_3496at 3761.462 kb on + strandat 3761.539 kb on - strand, within Dsui_3496at 3761.539 kb on - strand, within Dsui_3496at 3761.545 kb on - strand, within Dsui_3496at 3761.551 kb on + strandat 3761.552 kb on + strand, within Dsui_3496

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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3,758,762 + -0.5
3,758,802 - -0.1
3,758,888 - -0.1
3,758,899 + +0.1
3,759,085 - -0.3
3,759,097 + +0.5
3,759,128 - -0.2
3,759,251 - -0.1
3,759,263 + -0.1
3,759,271 - +0.0
3,759,271 - +0.0
3,759,374 - Dsui_3493 0.17 +0.1
3,759,445 - Dsui_3493 0.33 -0.3
3,759,547 + Dsui_3493 0.56 +0.2
3,759,547 - Dsui_3493 0.56 +0.6
3,759,552 - Dsui_3493 0.57 -0.1
3,759,565 - Dsui_3493 0.60 -0.2
3,759,634 - Dsui_3493 0.75 -0.2
3,759,675 + Dsui_3493 0.84 +0.0
3,759,675 + Dsui_3493 0.84 +0.1
3,761,125 - Dsui_3495 0.83 -0.8
3,761,179 - -0.8
3,761,254 + +2.0
3,761,327 + +0.3
3,761,444 + Dsui_3496 0.43 +0.5
3,761,462 + +1.3
3,761,539 - Dsui_3496 0.60 +0.2
3,761,539 - Dsui_3496 0.60 +0.2
3,761,545 - Dsui_3496 0.61 +0.3
3,761,551 + +2.9
3,761,552 + Dsui_3496 0.63 +1.2

Or see this region's nucleotide sequence