Strain Fitness in Dechlorosoma suillum PS around Dsui_3424

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3423 and Dsui_3424 are separated by 85 nucleotidesDsui_3424 and Dsui_3425 are separated by 82 nucleotidesDsui_3425 and Dsui_3426 are separated by 189 nucleotides Dsui_3423: Dsui_3423 - hydroxypyruvate isomerase, at 3,674,894 to 3,675,688 _3423 Dsui_3424: Dsui_3424 - ATP:cob(I)alamin adenosyltransferase, at 3,675,774 to 3,676,352 _3424 Dsui_3425: Dsui_3425 - putative translation initiation inhibitor, yjgF family, at 3,676,435 to 3,676,833 _3425 Dsui_3426: Dsui_3426 - transcriptional regulator, at 3,677,023 to 3,677,925 _3426 Position (kb) 3675 3676 3677Strain fitness (log2 ratio) -1 0 1 2at 3674.863 kb on + strandat 3674.889 kb on - strandat 3674.929 kb on - strandat 3674.929 kb on - strandat 3675.112 kb on + strandat 3675.196 kb on - strand, within Dsui_3423at 3675.480 kb on - strand, within Dsui_3423at 3675.563 kb on - strand, within Dsui_3423at 3675.579 kb on - strand, within Dsui_3423at 3675.670 kb on - strandat 3675.723 kb on + strandat 3675.742 kb on + strandat 3675.760 kb on - strandat 3675.765 kb on - strandat 3675.818 kb on + strandat 3675.852 kb on + strand, within Dsui_3424at 3675.912 kb on + strand, within Dsui_3424at 3676.039 kb on + strand, within Dsui_3424at 3676.042 kb on - strandat 3676.259 kb on + strand, within Dsui_3424at 3676.313 kb on + strandat 3676.489 kb on - strandat 3676.497 kb on + strand, within Dsui_3425at 3676.538 kb on - strand, within Dsui_3425at 3676.561 kb on + strandat 3676.621 kb on + strand, within Dsui_3425at 3676.646 kb on + strandat 3676.654 kb on - strandat 3676.778 kb on + strand, within Dsui_3425at 3676.788 kb on + strandat 3676.788 kb on - strandat 3676.796 kb on - strandat 3676.895 kb on + strandat 3676.904 kb on + strandat 3676.921 kb on - strandat 3676.930 kb on + strandat 3677.093 kb on - strandat 3677.290 kb on - strand, within Dsui_3426

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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3,674,863 + -1.0
3,674,889 - +0.2
3,674,929 - -0.5
3,674,929 - -0.1
3,675,112 + -0.2
3,675,196 - Dsui_3423 0.38 -1.5
3,675,480 - Dsui_3423 0.74 -0.1
3,675,563 - Dsui_3423 0.84 -0.2
3,675,579 - Dsui_3423 0.86 +0.4
3,675,670 - -1.0
3,675,723 + -1.0
3,675,742 + +0.9
3,675,760 - -0.7
3,675,765 - +1.3
3,675,818 + +2.3
3,675,852 + Dsui_3424 0.13 -0.8
3,675,912 + Dsui_3424 0.24 +0.2
3,676,039 + Dsui_3424 0.46 -1.3
3,676,042 - +1.3
3,676,259 + Dsui_3424 0.84 -0.9
3,676,313 + +0.3
3,676,489 - -0.7
3,676,497 + Dsui_3425 0.16 +0.8
3,676,538 - Dsui_3425 0.26 +1.3
3,676,561 + +0.6
3,676,621 + Dsui_3425 0.47 +1.3
3,676,646 + +2.3
3,676,654 - -0.2
3,676,778 + Dsui_3425 0.86 +1.3
3,676,788 + +0.3
3,676,788 - +1.3
3,676,796 - +0.8
3,676,895 + +0.3
3,676,904 + -0.7
3,676,921 - +0.3
3,676,930 + +0.8
3,677,093 - -1.2
3,677,290 - Dsui_3426 0.30 -1.7

Or see this region's nucleotide sequence