Strain Fitness in Dechlorosoma suillum PS around Dsui_3084

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3083 and Dsui_3084 are separated by 98 nucleotidesDsui_3084 and Dsui_3085 are separated by 274 nucleotides Dsui_3083: Dsui_3083 - ABC-type branched-chain amino acid transport system, periplasmic component, at 3,300,808 to 3,301,953 _3083 Dsui_3084: Dsui_3084 - cysteinyl-tRNA synthetase, at 3,302,052 to 3,303,482 _3084 Dsui_3085: Dsui_3085 - tetratricopeptide repeat protein, at 3,303,757 to 3,304,920 _3085 Position (kb) 3302 3303 3304Strain fitness (log2 ratio) -2 -1 0 1 2at 3301.128 kb on - strand, within Dsui_3083at 3301.188 kb on - strand, within Dsui_3083at 3301.328 kb on + strand, within Dsui_3083at 3301.328 kb on + strand, within Dsui_3083at 3301.444 kb on - strand, within Dsui_3083at 3301.451 kb on + strand, within Dsui_3083at 3301.454 kb on - strand, within Dsui_3083at 3301.481 kb on - strand, within Dsui_3083at 3301.493 kb on - strand, within Dsui_3083at 3301.502 kb on + strand, within Dsui_3083at 3301.557 kb on + strand, within Dsui_3083at 3301.606 kb on + strand, within Dsui_3083at 3301.644 kb on + strand, within Dsui_3083at 3301.645 kb on + strand, within Dsui_3083at 3301.675 kb on - strand, within Dsui_3083at 3301.740 kb on - strand, within Dsui_3083at 3301.749 kb on + strand, within Dsui_3083at 3301.830 kb on + strand, within Dsui_3083at 3301.855 kb on - strandat 3301.855 kb on - strandat 3301.878 kb on + strandat 3301.942 kb on + strandat 3301.947 kb on + strandat 3302.052 kb on - strandat 3303.550 kb on - strandat 3303.560 kb on - strandat 3303.597 kb on - strandat 3303.631 kb on - strandat 3303.722 kb on - strandat 3303.750 kb on - strandat 3303.768 kb on + strandat 3303.817 kb on + strandat 3303.863 kb on + strandat 3304.080 kb on + strand, within Dsui_3085at 3304.107 kb on + strand, within Dsui_3085at 3304.126 kb on + strand, within Dsui_3085at 3304.137 kb on + strand, within Dsui_3085at 3304.137 kb on + strand, within Dsui_3085at 3304.171 kb on + strand, within Dsui_3085at 3304.234 kb on + strand, within Dsui_3085at 3304.279 kb on - strandat 3304.281 kb on + strand, within Dsui_3085at 3304.482 kb on + strand, within Dsui_3085

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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3,301,128 - Dsui_3083 0.28 +1.0
3,301,188 - Dsui_3083 0.33 +1.4
3,301,328 + Dsui_3083 0.45 +0.5
3,301,328 + Dsui_3083 0.45 +0.5
3,301,444 - Dsui_3083 0.55 +1.3
3,301,451 + Dsui_3083 0.56 +0.9
3,301,454 - Dsui_3083 0.56 +0.0
3,301,481 - Dsui_3083 0.59 -0.1
3,301,493 - Dsui_3083 0.60 +0.4
3,301,502 + Dsui_3083 0.61 +0.8
3,301,557 + Dsui_3083 0.65 +0.3
3,301,606 + Dsui_3083 0.70 +1.8
3,301,644 + Dsui_3083 0.73 +1.1
3,301,645 + Dsui_3083 0.73 +0.4
3,301,675 - Dsui_3083 0.76 +0.3
3,301,740 - Dsui_3083 0.81 +0.7
3,301,749 + Dsui_3083 0.82 +1.0
3,301,830 + Dsui_3083 0.89 -0.1
3,301,855 - -0.2
3,301,855 - +0.6
3,301,878 + +0.4
3,301,942 + +1.0
3,301,947 + -0.8
3,302,052 - +0.7
3,303,550 - -0.6
3,303,560 - +1.9
3,303,597 - -0.6
3,303,631 - +0.7
3,303,722 - -2.3
3,303,750 - -1.6
3,303,768 + -0.3
3,303,817 + +1.3
3,303,863 + -1.3
3,304,080 + Dsui_3085 0.28 +0.4
3,304,107 + Dsui_3085 0.30 -0.1
3,304,126 + Dsui_3085 0.32 -0.3
3,304,137 + Dsui_3085 0.33 +0.3
3,304,137 + Dsui_3085 0.33 +0.2
3,304,171 + Dsui_3085 0.36 +1.3
3,304,234 + Dsui_3085 0.41 +0.7
3,304,279 - -0.3
3,304,281 + Dsui_3085 0.45 -1.1
3,304,482 + Dsui_3085 0.62 +0.1

Or see this region's nucleotide sequence