Strain Fitness in Dechlorosoma suillum PS around Dsui_3081

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3079 and Dsui_3080 are separated by 145 nucleotidesDsui_3080 and Dsui_3081 are separated by 141 nucleotidesDsui_3081 and Dsui_3082 are separated by 98 nucleotides Dsui_3079: Dsui_3079 - serine/threonine protein kinase, at 3,295,256 to 3,296,653 _3079 Dsui_3080: Dsui_3080 - molecular chaperone GrpE (heat shock protein), at 3,296,799 to 3,297,356 _3080 Dsui_3081: Dsui_3081 - chaperone protein DnaK, at 3,297,498 to 3,299,429 _3081 Dsui_3082: Dsui_3082 - chaperone protein DnaJ, at 3,299,528 to 3,300,667 _3082 Position (kb) 3297 3298 3299 3300Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3296.547 kb on - strandat 3296.565 kb on - strandat 3296.567 kb on - strandat 3296.625 kb on + strandat 3296.662 kb on - strandat 3296.692 kb on + strandat 3296.704 kb on + strandat 3296.713 kb on - strandat 3296.921 kb on + strand, within Dsui_3080at 3297.341 kb on + strandat 3297.341 kb on + strandat 3297.479 kb on + strandat 3299.008 kb on + strand, within Dsui_3081at 3299.050 kb on + strand, within Dsui_3081at 3299.119 kb on + strand, within Dsui_3081at 3299.498 kb on + strandat 3299.510 kb on + strandat 3299.513 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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3,296,547 - +0.5
3,296,565 - -0.2
3,296,567 - +0.3
3,296,625 + -0.0
3,296,662 - +0.8
3,296,692 + -0.8
3,296,704 + +0.7
3,296,713 - +0.4
3,296,921 + Dsui_3080 0.22 -4.1
3,297,341 + +0.8
3,297,341 + +0.4
3,297,479 + -1.0
3,299,008 + Dsui_3081 0.78 -2.5
3,299,050 + Dsui_3081 0.80 -0.3
3,299,119 + Dsui_3081 0.84 -1.7
3,299,498 + +0.0
3,299,510 + -0.3
3,299,513 - -1.1

Or see this region's nucleotide sequence