Strain Fitness in Dechlorosoma suillum PS around Dsui_3072

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3070 and Dsui_3071 overlap by 70 nucleotidesDsui_3071 and Dsui_3072 are separated by 97 nucleotidesDsui_3072 and Dsui_3073 are separated by 3 nucleotides Dsui_3070: Dsui_3070 - periplasmic component of amino acid ABC-type transporter/signal transduction system, at 3,285,402 to 3,286,253 _3070 Dsui_3071: Dsui_3071 - SprA-related family, at 3,286,184 to 3,286,972 _3071 Dsui_3072: Dsui_3072 - DNA repair protein RecN, at 3,287,070 to 3,288,725 _3072 Dsui_3073: Dsui_3073 - putative sugar kinase, at 3,288,729 to 3,289,607 _3073 Position (kb) 3287 3288 3289Strain fitness (log2 ratio) -2 -1 0 1at 3286.342 kb on + strand, within Dsui_3071at 3286.351 kb on + strand, within Dsui_3071at 3286.376 kb on - strand, within Dsui_3071at 3286.497 kb on - strand, within Dsui_3071at 3286.518 kb on + strand, within Dsui_3071at 3286.592 kb on - strand, within Dsui_3071at 3286.640 kb on - strand, within Dsui_3071at 3286.640 kb on - strand, within Dsui_3071at 3286.665 kb on + strand, within Dsui_3071at 3286.684 kb on + strandat 3286.776 kb on - strand, within Dsui_3071at 3286.988 kb on - strandat 3287.299 kb on + strandat 3287.446 kb on + strandat 3287.922 kb on - strand, within Dsui_3072at 3287.950 kb on - strand, within Dsui_3072at 3287.986 kb on + strandat 3287.999 kb on - strand, within Dsui_3072at 3288.130 kb on + strandat 3288.406 kb on + strand, within Dsui_3072at 3288.517 kb on - strand, within Dsui_3072at 3288.544 kb on - strand, within Dsui_3072at 3288.727 kb on + strandat 3288.735 kb on - strandat 3289.636 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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3,286,342 + Dsui_3071 0.20 +0.3
3,286,351 + Dsui_3071 0.21 +0.8
3,286,376 - Dsui_3071 0.24 +0.4
3,286,497 - Dsui_3071 0.40 +0.5
3,286,518 + Dsui_3071 0.42 +1.7
3,286,592 - Dsui_3071 0.52 +0.7
3,286,640 - Dsui_3071 0.58 +0.0
3,286,640 - Dsui_3071 0.58 -0.3
3,286,665 + Dsui_3071 0.61 -0.2
3,286,684 + +1.3
3,286,776 - Dsui_3071 0.75 -0.2
3,286,988 - +0.5
3,287,299 + +0.3
3,287,446 + +1.3
3,287,922 - Dsui_3072 0.51 -0.6
3,287,950 - Dsui_3072 0.53 -1.5
3,287,986 + +1.3
3,287,999 - Dsui_3072 0.56 -0.7
3,288,130 + +1.3
3,288,406 + Dsui_3072 0.81 -2.0
3,288,517 - Dsui_3072 0.87 +0.2
3,288,544 - Dsui_3072 0.89 -0.8
3,288,727 + +1.1
3,288,735 - +1.5
3,289,636 - +1.7

Or see this region's nucleotide sequence