Strain Fitness in Dechlorosoma suillum PS around Dsui_3061

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3059 and Dsui_3060 are separated by 91 nucleotidesDsui_3060 and Dsui_3061 are separated by 35 nucleotidesDsui_3061 and Dsui_3062 are separated by 16 nucleotidesDsui_3062 and Dsui_3063 are separated by 96 nucleotides Dsui_3059: Dsui_3059 - ATP-dependent metalloprotease FtsH, at 3,274,063 to 3,275,946 _3059 Dsui_3060: Dsui_3060 - 23S rRNA methylase, at 3,276,038 to 3,276,670 _3060 Dsui_3061: Dsui_3061 - putative RNA-binding protein, YhbY family, at 3,276,706 to 3,277,062 _3061 Dsui_3062: Dsui_3062 - hypothetical protein, at 3,277,079 to 3,277,570 _3062 Dsui_3063: Dsui_3063 - transcription elongation factor GreA, at 3,277,667 to 3,278,143 _3063 Position (kb) 3276 3277 3278Strain fitness (log2 ratio) -2 -1 0 1at 3275.971 kb on - strandat 3276.035 kb on + strandat 3276.040 kb on + strandat 3276.055 kb on - strandat 3276.114 kb on - strand, within Dsui_3060at 3276.138 kb on - strand, within Dsui_3060at 3276.138 kb on - strand, within Dsui_3060at 3276.138 kb on - strand, within Dsui_3060at 3276.171 kb on + strand, within Dsui_3060at 3276.253 kb on + strand, within Dsui_3060at 3276.253 kb on + strandat 3276.253 kb on + strand, within Dsui_3060at 3276.261 kb on - strand, within Dsui_3060at 3276.261 kb on - strand, within Dsui_3060at 3276.261 kb on - strand, within Dsui_3060at 3276.261 kb on - strand, within Dsui_3060at 3276.265 kb on - strand, within Dsui_3060at 3276.416 kb on - strand, within Dsui_3060at 3276.467 kb on - strand, within Dsui_3060at 3276.528 kb on + strandat 3276.563 kb on - strand, within Dsui_3060at 3276.563 kb on - strand, within Dsui_3060at 3276.565 kb on + strandat 3276.573 kb on - strand, within Dsui_3060at 3276.573 kb on - strand, within Dsui_3060at 3276.639 kb on - strandat 3276.795 kb on + strand, within Dsui_3061at 3276.803 kb on - strand, within Dsui_3061at 3276.852 kb on + strand, within Dsui_3061at 3276.860 kb on - strand, within Dsui_3061at 3277.056 kb on + strandat 3277.090 kb on - strandat 3277.161 kb on - strand, within Dsui_3062at 3277.161 kb on - strand, within Dsui_3062at 3277.166 kb on + strand, within Dsui_3062at 3277.174 kb on - strand, within Dsui_3062at 3277.190 kb on + strand, within Dsui_3062at 3277.370 kb on - strand, within Dsui_3062at 3277.440 kb on + strand, within Dsui_3062at 3277.443 kb on - strand, within Dsui_3062at 3277.479 kb on - strand, within Dsui_3062at 3277.519 kb on - strand, within Dsui_3062at 3277.661 kb on - strandat 3277.709 kb on + strandat 3277.771 kb on - strand, within Dsui_3063at 3277.864 kb on + strand, within Dsui_3063at 3277.961 kb on - strand, within Dsui_3063

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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3,275,971 - +0.2
3,276,035 + +0.3
3,276,040 + +0.7
3,276,055 - -1.9
3,276,114 - Dsui_3060 0.12 +1.1
3,276,138 - Dsui_3060 0.16 -0.2
3,276,138 - Dsui_3060 0.16 -0.4
3,276,138 - Dsui_3060 0.16 -0.4
3,276,171 + Dsui_3060 0.21 -2.0
3,276,253 + Dsui_3060 0.34 -0.7
3,276,253 + +0.1
3,276,253 + Dsui_3060 0.34 -0.7
3,276,261 - Dsui_3060 0.35 -0.2
3,276,261 - Dsui_3060 0.35 +0.1
3,276,261 - Dsui_3060 0.35 -0.5
3,276,261 - Dsui_3060 0.35 +0.1
3,276,265 - Dsui_3060 0.36 +0.1
3,276,416 - Dsui_3060 0.60 -0.4
3,276,467 - Dsui_3060 0.68 -0.2
3,276,528 + -1.3
3,276,563 - Dsui_3060 0.83 +0.4
3,276,563 - Dsui_3060 0.83 -1.5
3,276,565 + -0.3
3,276,573 - Dsui_3060 0.85 +0.3
3,276,573 - Dsui_3060 0.85 +0.5
3,276,639 - -0.2
3,276,795 + Dsui_3061 0.25 -0.3
3,276,803 - Dsui_3061 0.27 +0.1
3,276,852 + Dsui_3061 0.41 -0.7
3,276,860 - Dsui_3061 0.43 -0.2
3,277,056 + +0.3
3,277,090 - -0.5
3,277,161 - Dsui_3062 0.17 +0.0
3,277,161 - Dsui_3062 0.17 +0.1
3,277,166 + Dsui_3062 0.18 +0.0
3,277,174 - Dsui_3062 0.19 +0.0
3,277,190 + Dsui_3062 0.23 -0.0
3,277,370 - Dsui_3062 0.59 +0.5
3,277,440 + Dsui_3062 0.73 +0.1
3,277,443 - Dsui_3062 0.74 +0.7
3,277,479 - Dsui_3062 0.81 +0.6
3,277,519 - Dsui_3062 0.89 -0.2
3,277,661 - +0.2
3,277,709 + -0.2
3,277,771 - Dsui_3063 0.22 -1.0
3,277,864 + Dsui_3063 0.41 -0.4
3,277,961 - Dsui_3063 0.62 +0.3

Or see this region's nucleotide sequence