Strain Fitness in Dechlorosoma suillum PS around Dsui_2933

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2932 and Dsui_2933 are separated by 10 nucleotidesDsui_2933 and Dsui_2934 are separated by 63 nucleotidesDsui_2934 and Dsui_2935 are separated by 239 nucleotides Dsui_2932: Dsui_2932 - membrane-fusion protein, at 3,135,220 to 3,136,389 _2932 Dsui_2933: Dsui_2933 - heavy metal efflux pump, cobalt-zinc-cadmium, at 3,136,400 to 3,139,513 _2933 Dsui_2934: Dsui_2934 - hypothetical protein, at 3,139,577 to 3,139,960 _2934 Dsui_2935: Dsui_2935 - NAD/NADP transhydrogenase alpha subunit, at 3,140,200 to 3,141,327 _2935 Position (kb) 3136 3137 3138 3139 3140Strain fitness (log2 ratio) -2 -1 0 1 2at 3135.467 kb on + strandat 3135.475 kb on - strandat 3135.475 kb on - strandat 3135.539 kb on + strandat 3135.575 kb on + strandat 3135.577 kb on - strandat 3135.620 kb on + strandat 3135.620 kb on + strand, within Dsui_2932at 3135.674 kb on - strandat 3135.720 kb on + strandat 3135.733 kb on - strand, within Dsui_2932at 3135.924 kb on - strandat 3135.946 kb on + strandat 3135.963 kb on - strandat 3136.123 kb on + strand, within Dsui_2932at 3136.264 kb on - strandat 3136.264 kb on - strandat 3136.402 kb on + strandat 3136.505 kb on + strandat 3136.596 kb on - strandat 3136.613 kb on + strandat 3136.708 kb on + strandat 3136.758 kb on - strandat 3136.849 kb on + strand, within Dsui_2933at 3136.849 kb on + strand, within Dsui_2933at 3137.032 kb on - strandat 3137.155 kb on + strandat 3137.225 kb on + strandat 3137.288 kb on + strand, within Dsui_2933at 3137.301 kb on + strandat 3137.382 kb on + strandat 3137.419 kb on + strandat 3137.429 kb on + strandat 3137.565 kb on + strandat 3137.829 kb on - strandat 3138.050 kb on + strandat 3138.118 kb on + strand, within Dsui_2933at 3138.362 kb on - strandat 3138.474 kb on - strandat 3138.498 kb on + strandat 3138.592 kb on + strandat 3138.761 kb on + strand, within Dsui_2933at 3138.798 kb on + strandat 3138.806 kb on - strandat 3138.868 kb on - strand, within Dsui_2933at 3138.897 kb on - strand, within Dsui_2933at 3138.909 kb on + strandat 3138.963 kb on + strand, within Dsui_2933at 3139.007 kb on + strand, within Dsui_2933at 3139.066 kb on + strandat 3139.124 kb on + strandat 3139.203 kb on - strandat 3139.324 kb on - strandat 3139.420 kb on + strandat 3139.420 kb on + strandat 3139.557 kb on - strandat 3139.749 kb on + strand, within Dsui_2934at 3139.757 kb on - strand, within Dsui_2934at 3139.944 kb on + strandat 3139.963 kb on - strandat 3140.115 kb on + strandat 3140.115 kb on + strandat 3140.196 kb on - strandat 3140.205 kb on + strandat 3140.310 kb on + strandat 3140.317 kb on + strand, within Dsui_2935at 3140.427 kb on + strand, within Dsui_2935at 3140.462 kb on + strand, within Dsui_2935at 3140.467 kb on + strandat 3140.481 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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3,135,467 + +1.3
3,135,475 - +1.3
3,135,475 - -0.3
3,135,539 + +1.3
3,135,575 + +0.3
3,135,577 - +0.3
3,135,620 + +1.3
3,135,620 + Dsui_2932 0.34 -0.3
3,135,674 - +1.3
3,135,720 + +1.3
3,135,733 - Dsui_2932 0.44 +1.3
3,135,924 - +1.3
3,135,946 + +0.3
3,135,963 - +0.9
3,136,123 + Dsui_2932 0.77 -0.1
3,136,264 - +0.3
3,136,264 - +1.3
3,136,402 + -0.2
3,136,505 + -0.8
3,136,596 - +1.3
3,136,613 + -0.1
3,136,708 + -0.7
3,136,758 - +1.3
3,136,849 + Dsui_2933 0.14 +0.3
3,136,849 + Dsui_2933 0.14 -1.0
3,137,032 - -0.3
3,137,155 + -0.7
3,137,225 + +1.3
3,137,288 + Dsui_2933 0.29 -0.3
3,137,301 + +1.3
3,137,382 + -0.3
3,137,419 + -1.0
3,137,429 + +2.3
3,137,565 + -0.3
3,137,829 - +0.0
3,138,050 + +0.3
3,138,118 + Dsui_2933 0.55 -0.4
3,138,362 - -0.3
3,138,474 - +0.3
3,138,498 + +0.3
3,138,592 + -1.0
3,138,761 + Dsui_2933 0.76 -1.8
3,138,798 + +0.6
3,138,806 - +0.3
3,138,868 - Dsui_2933 0.79 -1.3
3,138,897 - Dsui_2933 0.80 -1.0
3,138,909 + +0.3
3,138,963 + Dsui_2933 0.82 -0.4
3,139,007 + Dsui_2933 0.84 +0.6
3,139,066 + +0.3
3,139,124 + -0.3
3,139,203 - +0.3
3,139,324 - -0.7
3,139,420 + +0.6
3,139,420 + -1.2
3,139,557 - -0.7
3,139,749 + Dsui_2934 0.45 -0.2
3,139,757 - Dsui_2934 0.47 +1.1
3,139,944 + -0.2
3,139,963 - -1.2
3,140,115 + -0.2
3,140,115 + +0.3
3,140,196 - +0.8
3,140,205 + +0.3
3,140,310 + +0.3
3,140,317 + Dsui_2935 0.10 -0.7
3,140,427 + Dsui_2935 0.20 -0.7
3,140,462 + Dsui_2935 0.23 -2.1
3,140,467 + +0.3
3,140,481 + -0.2

Or see this region's nucleotide sequence