Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2907 and Dsui_2908 are separated by 55 nucleotides Dsui_2908 and Dsui_2909 are separated by 67 nucleotides
Dsui_2907: Dsui_2907 - homoserine dehydrogenase, at 3,109,963 to 3,111,273
_2907
Dsui_2908: Dsui_2908 - aspartate/tyrosine/aromatic aminotransferase, at 3,111,329 to 3,112,555
_2908
Dsui_2909: Dsui_2909 - aspartate/tyrosine/aromatic aminotransferase, at 3,112,623 to 3,113,810
_2909
Position (kb)
3111
3112
3113 Strain fitness (log2 ratio)
-2
-1
0
1 at 3111.289 kb on - strand at 3111.335 kb on + strand at 3111.395 kb on - strand at 3111.439 kb on - strand at 3111.756 kb on + strand at 3111.931 kb on - strand, within Dsui_2908 at 3112.166 kb on - strand, within Dsui_2908 at 3112.211 kb on - strand, within Dsui_2908 at 3112.256 kb on - strand, within Dsui_2908 at 3112.318 kb on - strand, within Dsui_2908 at 3112.346 kb on - strand, within Dsui_2908 at 3112.632 kb on - strand at 3112.757 kb on + strand, within Dsui_2909 at 3112.839 kb on + strand, within Dsui_2909 at 3112.891 kb on + strand, within Dsui_2909 at 3112.899 kb on - strand, within Dsui_2909 at 3112.924 kb on - strand, within Dsui_2909 at 3112.947 kb on + strand, within Dsui_2909 at 3112.955 kb on - strand, within Dsui_2909 at 3112.955 kb on - strand, within Dsui_2909 at 3112.957 kb on - strand, within Dsui_2909 at 3112.980 kb on - strand, within Dsui_2909 at 3113.019 kb on - strand, within Dsui_2909 at 3113.046 kb on - strand, within Dsui_2909 at 3113.048 kb on - strand, within Dsui_2909 at 3113.144 kb on + strand, within Dsui_2909 at 3113.215 kb on - strand, within Dsui_2909 at 3113.284 kb on - strand, within Dsui_2909 at 3113.317 kb on - strand, within Dsui_2909 at 3113.386 kb on + strand at 3113.394 kb on - strand, within Dsui_2909 at 3113.476 kb on - strand, within Dsui_2909 at 3113.476 kb on - strand, within Dsui_2909 at 3113.491 kb on - strand, within Dsui_2909 at 3113.501 kb on - strand, within Dsui_2909
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 3,111,289 - -1.2 3,111,335 + -0.2 3,111,395 - +0.0 3,111,439 - -0.4 3,111,756 + +0.8 3,111,931 - Dsui_2908 0.49 -1.4 3,112,166 - Dsui_2908 0.68 -0.3 3,112,211 - Dsui_2908 0.72 -0.9 3,112,256 - Dsui_2908 0.76 -1.3 3,112,318 - Dsui_2908 0.81 -0.9 3,112,346 - Dsui_2908 0.83 -2.4 3,112,632 - +0.7 3,112,757 + Dsui_2909 0.11 +0.1 3,112,839 + Dsui_2909 0.18 -0.6 3,112,891 + Dsui_2909 0.23 -0.4 3,112,899 - Dsui_2909 0.23 -0.3 3,112,924 - Dsui_2909 0.25 +0.2 3,112,947 + Dsui_2909 0.27 -2.6 3,112,955 - Dsui_2909 0.28 +0.0 3,112,955 - Dsui_2909 0.28 -0.2 3,112,957 - Dsui_2909 0.28 +1.0 3,112,980 - Dsui_2909 0.30 -0.5 3,113,019 - Dsui_2909 0.33 -0.3 3,113,046 - Dsui_2909 0.36 +0.4 3,113,048 - Dsui_2909 0.36 +0.1 3,113,144 + Dsui_2909 0.44 -0.5 3,113,215 - Dsui_2909 0.50 -0.6 3,113,284 - Dsui_2909 0.56 +0.4 3,113,317 - Dsui_2909 0.58 -0.5 3,113,386 + +1.4 3,113,394 - Dsui_2909 0.65 -2.4 3,113,476 - Dsui_2909 0.72 +0.0 3,113,476 - Dsui_2909 0.72 -0.9 3,113,491 - Dsui_2909 0.73 -0.9 3,113,501 - Dsui_2909 0.74 -0.6
Or see this region's nucleotide sequence