Strain Fitness in Dechlorosoma suillum PS around Dsui_2908

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2907 and Dsui_2908 are separated by 55 nucleotidesDsui_2908 and Dsui_2909 are separated by 67 nucleotides Dsui_2907: Dsui_2907 - homoserine dehydrogenase, at 3,109,963 to 3,111,273 _2907 Dsui_2908: Dsui_2908 - aspartate/tyrosine/aromatic aminotransferase, at 3,111,329 to 3,112,555 _2908 Dsui_2909: Dsui_2909 - aspartate/tyrosine/aromatic aminotransferase, at 3,112,623 to 3,113,810 _2909 Position (kb) 3111 3112 3113Strain fitness (log2 ratio) -2 -1 0 1at 3111.289 kb on - strandat 3111.335 kb on + strandat 3111.395 kb on - strandat 3111.439 kb on - strandat 3111.756 kb on + strandat 3111.931 kb on - strand, within Dsui_2908at 3112.166 kb on - strand, within Dsui_2908at 3112.211 kb on - strand, within Dsui_2908at 3112.256 kb on - strand, within Dsui_2908at 3112.318 kb on - strand, within Dsui_2908at 3112.346 kb on - strand, within Dsui_2908at 3112.632 kb on - strandat 3112.757 kb on + strand, within Dsui_2909at 3112.839 kb on + strand, within Dsui_2909at 3112.891 kb on + strand, within Dsui_2909at 3112.899 kb on - strand, within Dsui_2909at 3112.924 kb on - strand, within Dsui_2909at 3112.947 kb on + strand, within Dsui_2909at 3112.955 kb on - strand, within Dsui_2909at 3112.955 kb on - strand, within Dsui_2909at 3112.957 kb on - strand, within Dsui_2909at 3112.980 kb on - strand, within Dsui_2909at 3113.019 kb on - strand, within Dsui_2909at 3113.046 kb on - strand, within Dsui_2909at 3113.048 kb on - strand, within Dsui_2909at 3113.144 kb on + strand, within Dsui_2909at 3113.215 kb on - strand, within Dsui_2909at 3113.284 kb on - strand, within Dsui_2909at 3113.317 kb on - strand, within Dsui_2909at 3113.386 kb on + strandat 3113.394 kb on - strand, within Dsui_2909at 3113.476 kb on - strand, within Dsui_2909at 3113.476 kb on - strand, within Dsui_2909at 3113.491 kb on - strand, within Dsui_2909at 3113.501 kb on - strand, within Dsui_2909

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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3,111,289 - -1.2
3,111,335 + -0.2
3,111,395 - +0.0
3,111,439 - -0.4
3,111,756 + +0.8
3,111,931 - Dsui_2908 0.49 -1.4
3,112,166 - Dsui_2908 0.68 -0.3
3,112,211 - Dsui_2908 0.72 -0.9
3,112,256 - Dsui_2908 0.76 -1.3
3,112,318 - Dsui_2908 0.81 -0.9
3,112,346 - Dsui_2908 0.83 -2.4
3,112,632 - +0.7
3,112,757 + Dsui_2909 0.11 +0.1
3,112,839 + Dsui_2909 0.18 -0.6
3,112,891 + Dsui_2909 0.23 -0.4
3,112,899 - Dsui_2909 0.23 -0.3
3,112,924 - Dsui_2909 0.25 +0.2
3,112,947 + Dsui_2909 0.27 -2.6
3,112,955 - Dsui_2909 0.28 +0.0
3,112,955 - Dsui_2909 0.28 -0.2
3,112,957 - Dsui_2909 0.28 +1.0
3,112,980 - Dsui_2909 0.30 -0.5
3,113,019 - Dsui_2909 0.33 -0.3
3,113,046 - Dsui_2909 0.36 +0.4
3,113,048 - Dsui_2909 0.36 +0.1
3,113,144 + Dsui_2909 0.44 -0.5
3,113,215 - Dsui_2909 0.50 -0.6
3,113,284 - Dsui_2909 0.56 +0.4
3,113,317 - Dsui_2909 0.58 -0.5
3,113,386 + +1.4
3,113,394 - Dsui_2909 0.65 -2.4
3,113,476 - Dsui_2909 0.72 +0.0
3,113,476 - Dsui_2909 0.72 -0.9
3,113,491 - Dsui_2909 0.73 -0.9
3,113,501 - Dsui_2909 0.74 -0.6

Or see this region's nucleotide sequence