Strain Fitness in Dechlorosoma suillum PS around Dsui_2873

Experiment: Anaero. lactate (C), chlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2871 and Dsui_2872 are separated by 176 nucleotidesDsui_2872 and Dsui_2873 are separated by 10 nucleotidesDsui_2873 and Dsui_2874 are separated by 222 nucleotides Dsui_2871: Dsui_2871 - FHA domain-containing protein, at 3,065,909 to 3,066,799 _2871 Dsui_2872: Dsui_2872 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 3,066,976 to 3,067,464 _2872 Dsui_2873: Dsui_2873 - Peroxiredoxin, at 3,067,475 to 3,067,939 _2873 Dsui_2874: Dsui_2874 - putative periplasmic/secreted protein, at 3,068,162 to 3,068,845 _2874 Position (kb) 3067 3068Strain fitness (log2 ratio) -1 0 1 2at 3066.624 kb on - strand, within Dsui_2871at 3066.626 kb on + strandat 3066.665 kb on + strand, within Dsui_2871at 3066.776 kb on + strandat 3066.833 kb on - strandat 3066.833 kb on - strandat 3066.865 kb on + strandat 3066.890 kb on + strandat 3067.064 kb on - strand, within Dsui_2872at 3067.066 kb on - strand, within Dsui_2872at 3067.092 kb on - strand, within Dsui_2872at 3067.097 kb on - strand, within Dsui_2872at 3067.243 kb on - strand, within Dsui_2872at 3067.310 kb on + strand, within Dsui_2872at 3067.318 kb on - strand, within Dsui_2872at 3067.433 kb on + strandat 3067.583 kb on - strand, within Dsui_2873at 3067.937 kb on - strandat 3068.119 kb on + strandat 3068.194 kb on - strandat 3068.244 kb on + strand, within Dsui_2874at 3068.382 kb on + strand, within Dsui_2874at 3068.423 kb on + strand, within Dsui_2874at 3068.423 kb on + strand, within Dsui_2874at 3068.438 kb on + strand, within Dsui_2874at 3068.547 kb on + strand, within Dsui_2874at 3068.933 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
remove
3,066,624 - Dsui_2871 0.80 -0.6
3,066,626 + -0.6
3,066,665 + Dsui_2871 0.85 -0.2
3,066,776 + -1.2
3,066,833 - +0.4
3,066,833 - -0.1
3,066,865 + +1.4
3,066,890 + -0.9
3,067,064 - Dsui_2872 0.18 -0.1
3,067,066 - Dsui_2872 0.18 -0.4
3,067,092 - Dsui_2872 0.24 +0.6
3,067,097 - Dsui_2872 0.25 -0.1
3,067,243 - Dsui_2872 0.55 +0.6
3,067,310 + Dsui_2872 0.68 +0.3
3,067,318 - Dsui_2872 0.70 +0.3
3,067,433 + -0.2
3,067,583 - Dsui_2873 0.23 -0.7
3,067,937 - -0.5
3,068,119 + +0.4
3,068,194 - -0.2
3,068,244 + Dsui_2874 0.12 +0.7
3,068,382 + Dsui_2874 0.32 +0.3
3,068,423 + Dsui_2874 0.38 +0.4
3,068,423 + Dsui_2874 0.38 -0.1
3,068,438 + Dsui_2874 0.40 +0.4
3,068,547 + Dsui_2874 0.56 +0.2
3,068,933 - +2.0

Or see this region's nucleotide sequence