Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2609 and Dsui_2610 are separated by 78 nucleotides Dsui_2610 and Dsui_2611 are separated by 7 nucleotides Dsui_2611 and Dsui_2612 overlap by 4 nucleotides Dsui_2612 and Dsui_2613 overlap by 4 nucleotides
Dsui_2609: Dsui_2609 - hypothetical protein, at 2,764,620 to 2,764,883
_2609
Dsui_2610: Dsui_2610 - single-stranded DNA-binding protein, at 2,764,962 to 2,765,330
_2610
Dsui_2611: Dsui_2611 - hypothetical protein, at 2,765,338 to 2,765,667
_2611
Dsui_2612: Dsui_2612 - hypothetical protein, at 2,765,664 to 2,766,197
_2612
Dsui_2613: Dsui_2613 - integrating conjugative element protein, PFL_4669 family, at 2,766,194 to 2,767,207
_2613
Position (kb)
2765
2766
2767 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2764.727 kb on - strand, within Dsui_2609 at 2764.755 kb on - strand, within Dsui_2609 at 2764.797 kb on + strand, within Dsui_2609 at 2764.806 kb on + strand at 2764.845 kb on + strand, within Dsui_2609 at 2764.853 kb on - strand, within Dsui_2609 at 2764.853 kb on - strand, within Dsui_2609 at 2764.853 kb on - strand at 2764.994 kb on - strand at 2765.068 kb on - strand, within Dsui_2610 at 2765.125 kb on - strand, within Dsui_2610 at 2765.178 kb on - strand, within Dsui_2610 at 2765.193 kb on - strand at 2765.195 kb on + strand, within Dsui_2610 at 2765.254 kb on - strand, within Dsui_2610 at 2765.425 kb on - strand, within Dsui_2611 at 2765.425 kb on - strand, within Dsui_2611 at 2765.425 kb on - strand, within Dsui_2611 at 2765.427 kb on + strand at 2765.474 kb on - strand, within Dsui_2611 at 2765.564 kb on - strand, within Dsui_2611 at 2765.638 kb on - strand at 2765.638 kb on - strand at 2765.670 kb on + strand at 2765.736 kb on - strand, within Dsui_2612 at 2765.792 kb on - strand at 2765.792 kb on - strand, within Dsui_2612 at 2765.904 kb on - strand, within Dsui_2612 at 2765.991 kb on + strand, within Dsui_2612 at 2766.118 kb on + strand, within Dsui_2612 at 2766.165 kb on - strand at 2766.169 kb on + strand at 2766.276 kb on + strand at 2766.415 kb on + strand, within Dsui_2613 at 2766.423 kb on - strand, within Dsui_2613 at 2766.423 kb on - strand, within Dsui_2613 at 2766.423 kb on - strand, within Dsui_2613 at 2766.512 kb on + strand at 2766.519 kb on - strand, within Dsui_2613 at 2766.563 kb on - strand, within Dsui_2613 at 2766.691 kb on - strand, within Dsui_2613 at 2766.734 kb on - strand, within Dsui_2613 at 2766.797 kb on - strand, within Dsui_2613 at 2766.803 kb on - strand, within Dsui_2613 at 2766.927 kb on + strand, within Dsui_2613 at 2767.067 kb on + strand at 2767.144 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 2,764,727 - Dsui_2609 0.41 +0.3 2,764,755 - Dsui_2609 0.51 -0.8 2,764,797 + Dsui_2609 0.67 -2.1 2,764,806 + +0.6 2,764,845 + Dsui_2609 0.85 -0.2 2,764,853 - Dsui_2609 0.88 +1.0 2,764,853 - Dsui_2609 0.88 -1.4 2,764,853 - +1.0 2,764,994 - -0.2 2,765,068 - Dsui_2610 0.29 +0.0 2,765,125 - Dsui_2610 0.44 -1.4 2,765,178 - Dsui_2610 0.59 -0.1 2,765,193 - +1.6 2,765,195 + Dsui_2610 0.63 -1.1 2,765,254 - Dsui_2610 0.79 -0.1 2,765,425 - Dsui_2611 0.26 +0.4 2,765,425 - Dsui_2611 0.26 +0.6 2,765,425 - Dsui_2611 0.26 -0.6 2,765,427 + -0.4 2,765,474 - Dsui_2611 0.41 +0.5 2,765,564 - Dsui_2611 0.68 -0.4 2,765,638 - -0.5 2,765,638 - -0.7 2,765,670 + -2.1 2,765,736 - Dsui_2612 0.13 +0.9 2,765,792 - -1.0 2,765,792 - Dsui_2612 0.24 +0.2 2,765,904 - Dsui_2612 0.45 -0.2 2,765,991 + Dsui_2612 0.61 +1.6 2,766,118 + Dsui_2612 0.85 -0.8 2,766,165 - -0.7 2,766,169 + -0.6 2,766,276 + +0.2 2,766,415 + Dsui_2613 0.22 -0.6 2,766,423 - Dsui_2613 0.23 +0.0 2,766,423 - Dsui_2613 0.23 -0.2 2,766,423 - Dsui_2613 0.23 +1.0 2,766,512 + -0.7 2,766,519 - Dsui_2613 0.32 -1.0 2,766,563 - Dsui_2613 0.36 -0.6 2,766,691 - Dsui_2613 0.49 +3.0 2,766,734 - Dsui_2613 0.53 -0.6 2,766,797 - Dsui_2613 0.59 -0.1 2,766,803 - Dsui_2613 0.60 +0.4 2,766,927 + Dsui_2613 0.72 -0.2 2,767,067 + +0.0 2,767,144 + -1.0
Or see this region's nucleotide sequence