Strain Fitness in Dechlorosoma suillum PS around Dsui_2544

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2542 and Dsui_2543 are separated by 11 nucleotidesDsui_2543 and Dsui_2544 are separated by 153 nucleotidesDsui_2544 and Dsui_2545 are separated by 14 nucleotidesDsui_2545 and Dsui_2546 are separated by 27 nucleotides Dsui_2542: Dsui_2542 - FAD/FMN-dependent dehydrogenase, at 2,693,762 to 2,695,168 _2542 Dsui_2543: Dsui_2543 - hypothetical protein, at 2,695,180 to 2,695,383 _2543 Dsui_2544: Dsui_2544 - disulfide bond chaperone, at 2,695,537 to 2,696,394 _2544 Dsui_2545: Dsui_2545 - transcriptional regulator, Spx/MgsR family, at 2,696,409 to 2,696,756 _2545 Dsui_2546: Dsui_2546 - transcriptional accessory protein, at 2,696,784 to 2,699,099 _2546 Position (kb) 2695 2696 2697Strain fitness (log2 ratio) -1 0 1 2at 2695.332 kb on + strand, within Dsui_2543at 2695.388 kb on - strandat 2695.411 kb on - strandat 2695.500 kb on + strandat 2695.508 kb on - strandat 2695.567 kb on - strandat 2695.706 kb on - strand, within Dsui_2544at 2695.718 kb on - strand, within Dsui_2544at 2695.750 kb on - strand, within Dsui_2544at 2695.757 kb on - strand, within Dsui_2544at 2695.865 kb on + strandat 2695.919 kb on - strand, within Dsui_2544at 2696.053 kb on + strand, within Dsui_2544at 2696.120 kb on + strand, within Dsui_2544at 2696.204 kb on - strand, within Dsui_2544at 2696.379 kb on + strandat 2696.503 kb on - strand, within Dsui_2545at 2696.532 kb on - strand, within Dsui_2545at 2696.589 kb on - strand, within Dsui_2545at 2696.693 kb on + strand, within Dsui_2545at 2696.741 kb on + strandat 2696.746 kb on + strandat 2696.746 kb on + strandat 2696.747 kb on + strandat 2696.804 kb on + strandat 2697.003 kb on - strandat 2697.088 kb on - strand, within Dsui_2546at 2697.242 kb on - strand, within Dsui_2546at 2697.289 kb on + strand, within Dsui_2546at 2697.370 kb on + strand, within Dsui_2546

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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2,695,332 + Dsui_2543 0.75 +0.5
2,695,388 - +0.8
2,695,411 - +1.1
2,695,500 + +0.3
2,695,508 - +0.4
2,695,567 - -0.8
2,695,706 - Dsui_2544 0.20 +0.6
2,695,718 - Dsui_2544 0.21 -0.4
2,695,750 - Dsui_2544 0.25 +0.6
2,695,757 - Dsui_2544 0.26 -1.6
2,695,865 + +2.0
2,695,919 - Dsui_2544 0.45 +0.5
2,696,053 + Dsui_2544 0.60 -0.1
2,696,120 + Dsui_2544 0.68 -0.7
2,696,204 - Dsui_2544 0.78 +1.2
2,696,379 + -0.6
2,696,503 - Dsui_2545 0.27 +0.8
2,696,532 - Dsui_2545 0.35 +0.1
2,696,589 - Dsui_2545 0.52 +0.3
2,696,693 + Dsui_2545 0.82 -0.3
2,696,741 + +0.2
2,696,746 + +0.4
2,696,746 + +0.1
2,696,747 + +0.2
2,696,804 + -0.5
2,697,003 - -0.6
2,697,088 - Dsui_2546 0.13 -0.2
2,697,242 - Dsui_2546 0.20 -0.1
2,697,289 + Dsui_2546 0.22 -0.1
2,697,370 + Dsui_2546 0.25 +0.1

Or see this region's nucleotide sequence