Strain Fitness in Dechlorosoma suillum PS around Dsui_2536

Experiment: Anaero. lactate (C), chlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2534 and Dsui_2535 are separated by 75 nucleotidesDsui_2535 and Dsui_2536 overlap by 66 nucleotidesDsui_2536 and Dsui_2537 are separated by 205 nucleotides Dsui_2534: Dsui_2534 - TRAP transporter, DctM subunit, at 2,685,636 to 2,686,925 _2534 Dsui_2535: Dsui_2535 - putative divalent heavy-metal cations transporter, at 2,687,001 to 2,687,774 _2535 Dsui_2536: Dsui_2536 - hypothetical protein, at 2,687,709 to 2,688,020 _2536 Dsui_2537: Dsui_2537 - poly(R)-hydroxyalkanoic acid synthase, class I, at 2,688,226 to 2,689,965 _2537 Position (kb) 2687 2688 2689Strain fitness (log2 ratio) -2 -1 0 1 2at 2686.734 kb on - strandat 2686.828 kb on - strandat 2687.077 kb on + strandat 2687.101 kb on + strand, within Dsui_2535at 2687.200 kb on - strand, within Dsui_2535at 2687.386 kb on - strand, within Dsui_2535at 2687.518 kb on - strandat 2687.569 kb on + strand, within Dsui_2535at 2687.689 kb on + strand, within Dsui_2535at 2687.695 kb on + strand, within Dsui_2535at 2687.768 kb on + strandat 2687.776 kb on - strand, within Dsui_2536at 2687.860 kb on - strand, within Dsui_2536at 2687.860 kb on - strand, within Dsui_2536at 2687.896 kb on - strand, within Dsui_2536at 2687.929 kb on + strand, within Dsui_2536at 2688.204 kb on + strandat 2688.206 kb on + strandat 2688.214 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
remove
2,686,734 - +0.6
2,686,828 - +0.4
2,687,077 + +0.4
2,687,101 + Dsui_2535 0.13 -0.5
2,687,200 - Dsui_2535 0.26 -2.2
2,687,386 - Dsui_2535 0.50 -0.2
2,687,518 - +0.0
2,687,569 + Dsui_2535 0.73 -0.7
2,687,689 + Dsui_2535 0.89 +0.0
2,687,695 + Dsui_2535 0.90 -0.0
2,687,768 + +0.2
2,687,776 - Dsui_2536 0.21 +0.5
2,687,860 - Dsui_2536 0.48 -0.2
2,687,860 - Dsui_2536 0.48 +0.3
2,687,896 - Dsui_2536 0.60 +1.0
2,687,929 + Dsui_2536 0.71 +0.7
2,688,204 + +1.9
2,688,206 + +0.2
2,688,214 - -1.2

Or see this region's nucleotide sequence