Strain Fitness in Dechlorosoma suillum PS around Dsui_2200

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2198 and Dsui_2199 are separated by 161 nucleotidesDsui_2199 and Dsui_2200 are separated by 28 nucleotidesDsui_2200 and Dsui_2201 are separated by 25 nucleotidesDsui_2201 and Dsui_2202 are separated by 68 nucleotides Dsui_2198: Dsui_2198 - ATP-dependent protease La, at 2,334,072 to 2,336,489 _2198 Dsui_2199: Dsui_2199 - bacterial nucleoid DNA-binding protein, at 2,336,651 to 2,336,923 _2199 Dsui_2200: Dsui_2200 - tRNA-Val, at 2,336,952 to 2,337,027 _2200 Dsui_2201: Dsui_2201 - tRNA-Asp, at 2,337,053 to 2,337,129 _2201 Dsui_2202: Dsui_2202 - parvulin-like peptidyl-prolyl isomerase, at 2,337,198 to 2,339,090 _2202 Position (kb) 2336 2337 2338Strain fitness (log2 ratio) -1 0 1 2 3at 2335.975 kb on - strandat 2336.285 kb on - strandat 2336.305 kb on - strandat 2336.607 kb on + strandat 2336.630 kb on + strandat 2336.637 kb on - strandat 2336.772 kb on + strand, within Dsui_2199at 2336.900 kb on + strandat 2337.048 kb on + strandat 2337.351 kb on - strandat 2337.365 kb on + strandat 2337.365 kb on + strandat 2337.365 kb on + strandat 2337.397 kb on - strand, within Dsui_2202at 2337.397 kb on - strandat 2337.397 kb on - strand, within Dsui_2202at 2337.400 kb on + strand, within Dsui_2202at 2337.416 kb on - strandat 2337.575 kb on + strand, within Dsui_2202at 2337.616 kb on - strand, within Dsui_2202at 2337.803 kb on + strand, within Dsui_2202at 2337.804 kb on + strand, within Dsui_2202at 2337.809 kb on + strand, within Dsui_2202at 2337.811 kb on - strand, within Dsui_2202at 2337.812 kb on - strand, within Dsui_2202at 2337.817 kb on - strandat 2337.822 kb on - strand, within Dsui_2202at 2337.896 kb on + strand, within Dsui_2202

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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2,335,975 - +2.9
2,336,285 - +2.6
2,336,305 - +3.5
2,336,607 + -0.6
2,336,630 + -1.3
2,336,637 - -0.8
2,336,772 + Dsui_2199 0.44 -0.8
2,336,900 + -0.7
2,337,048 + -0.7
2,337,351 - -1.1
2,337,365 + -0.1
2,337,365 + -0.5
2,337,365 + -0.2
2,337,397 - Dsui_2202 0.11 -0.5
2,337,397 - +1.5
2,337,397 - Dsui_2202 0.11 -0.2
2,337,400 + Dsui_2202 0.11 -0.0
2,337,416 - -0.1
2,337,575 + Dsui_2202 0.20 -1.7
2,337,616 - Dsui_2202 0.22 -1.1
2,337,803 + Dsui_2202 0.32 -0.1
2,337,804 + Dsui_2202 0.32 -0.1
2,337,809 + Dsui_2202 0.32 -0.6
2,337,811 - Dsui_2202 0.32 -1.5
2,337,812 - Dsui_2202 0.32 +0.3
2,337,817 - -0.8
2,337,822 - Dsui_2202 0.33 +0.9
2,337,896 + Dsui_2202 0.37 +0.2

Or see this region's nucleotide sequence