Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2195 and Dsui_2196 are separated by 125 nucleotides Dsui_2196 and Dsui_2197 are separated by 15 nucleotides Dsui_2197 and Dsui_2198 are separated by 114 nucleotides
Dsui_2195: Dsui_2195 - trigger factor, at 2,330,596 to 2,331,900
_2195
Dsui_2196: Dsui_2196 - ATP-dependent Clp protease, proteolytic subunit ClpP, at 2,332,026 to 2,332,667
_2196
Dsui_2197: Dsui_2197 - endopeptidase Clp ATP-binding regulatory subunit ClpX, at 2,332,683 to 2,333,957
_2197
Dsui_2198: Dsui_2198 - ATP-dependent protease La, at 2,334,072 to 2,336,489
_2198
Position (kb)
2332
2333
2334 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2331.684 kb on + strand, within Dsui_2195 at 2331.697 kb on - strand at 2331.699 kb on + strand, within Dsui_2195 at 2331.699 kb on + strand, within Dsui_2195 at 2331.751 kb on + strand, within Dsui_2195 at 2331.808 kb on + strand at 2331.982 kb on + strand at 2331.990 kb on + strand at 2331.990 kb on + strand at 2331.990 kb on - strand at 2331.997 kb on - strand at 2332.062 kb on + strand at 2332.064 kb on - strand at 2332.070 kb on - strand at 2332.071 kb on - strand at 2332.143 kb on - strand, within Dsui_2196 at 2332.146 kb on + strand, within Dsui_2196 at 2332.158 kb on - strand, within Dsui_2196 at 2332.183 kb on + strand, within Dsui_2196 at 2332.385 kb on + strand, within Dsui_2196 at 2332.608 kb on + strand at 2332.629 kb on + strand at 2332.629 kb on + strand at 2332.637 kb on - strand at 2332.639 kb on + strand at 2332.639 kb on + strand at 2332.726 kb on - strand at 2332.750 kb on - strand at 2332.876 kb on - strand, within Dsui_2197 at 2332.903 kb on + strand, within Dsui_2197 at 2332.959 kb on + strand, within Dsui_2197 at 2332.967 kb on - strand, within Dsui_2197 at 2333.032 kb on - strand, within Dsui_2197 at 2333.037 kb on - strand, within Dsui_2197 at 2333.052 kb on - strand at 2333.080 kb on + strand, within Dsui_2197 at 2333.087 kb on - strand, within Dsui_2197 at 2333.122 kb on - strand, within Dsui_2197 at 2333.132 kb on + strand, within Dsui_2197 at 2333.281 kb on - strand, within Dsui_2197 at 2333.321 kb on + strand, within Dsui_2197 at 2333.321 kb on + strand, within Dsui_2197 at 2333.321 kb on + strand, within Dsui_2197 at 2333.328 kb on - strand, within Dsui_2197 at 2333.357 kb on + strand, within Dsui_2197 at 2333.446 kb on + strand, within Dsui_2197 at 2333.505 kb on - strand at 2333.510 kb on + strand, within Dsui_2197 at 2333.541 kb on + strand, within Dsui_2197 at 2333.541 kb on + strand, within Dsui_2197 at 2333.560 kb on + strand, within Dsui_2197 at 2333.636 kb on + strand, within Dsui_2197 at 2333.644 kb on - strand, within Dsui_2197 at 2333.695 kb on + strand, within Dsui_2197 at 2333.705 kb on - strand, within Dsui_2197 at 2333.718 kb on - strand, within Dsui_2197 at 2333.825 kb on + strand, within Dsui_2197 at 2333.833 kb on + strand at 2333.918 kb on + strand at 2333.918 kb on + strand at 2333.931 kb on - strand at 2333.933 kb on + strand at 2333.933 kb on + strand at 2334.002 kb on + strand at 2334.038 kb on + strand at 2334.038 kb on + strand at 2334.046 kb on - strand at 2334.071 kb on - strand at 2334.079 kb on + strand at 2334.108 kb on + strand at 2334.108 kb on + strand at 2334.628 kb on + strand, within Dsui_2198 at 2334.745 kb on + strand, within Dsui_2198 at 2334.755 kb on + strand, within Dsui_2198 at 2334.779 kb on + strand, within Dsui_2198 at 2334.779 kb on + strand, within Dsui_2198 at 2334.779 kb on + strand, within Dsui_2198 at 2334.779 kb on + strand, within Dsui_2198 at 2334.787 kb on - strand at 2334.908 kb on + strand, within Dsui_2198
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 2,331,684 + Dsui_2195 0.83 +0.4 2,331,697 - -0.1 2,331,699 + Dsui_2195 0.85 +0.6 2,331,699 + Dsui_2195 0.85 +0.5 2,331,751 + Dsui_2195 0.89 +0.4 2,331,808 + -0.7 2,331,982 + +0.4 2,331,990 + +0.5 2,331,990 + -0.4 2,331,990 - +0.7 2,331,997 - +1.0 2,332,062 + -0.5 2,332,064 - -0.8 2,332,070 - +0.5 2,332,071 - -1.7 2,332,143 - Dsui_2196 0.18 -2.2 2,332,146 + Dsui_2196 0.19 -0.8 2,332,158 - Dsui_2196 0.21 -1.8 2,332,183 + Dsui_2196 0.24 -2.4 2,332,385 + Dsui_2196 0.56 -2.5 2,332,608 + -3.5 2,332,629 + -3.5 2,332,629 + -3.3 2,332,637 - +0.3 2,332,639 + +1.9 2,332,639 + +1.9 2,332,726 - +0.0 2,332,750 - -1.9 2,332,876 - Dsui_2197 0.15 -0.8 2,332,903 + Dsui_2197 0.17 -0.8 2,332,959 + Dsui_2197 0.22 -0.0 2,332,967 - Dsui_2197 0.22 -0.9 2,333,032 - Dsui_2197 0.27 -2.2 2,333,037 - Dsui_2197 0.28 -0.8 2,333,052 - -1.3 2,333,080 + Dsui_2197 0.31 -0.7 2,333,087 - Dsui_2197 0.32 -1.7 2,333,122 - Dsui_2197 0.34 -0.2 2,333,132 + Dsui_2197 0.35 -1.1 2,333,281 - Dsui_2197 0.47 -0.9 2,333,321 + Dsui_2197 0.50 -1.1 2,333,321 + Dsui_2197 0.50 -0.8 2,333,321 + Dsui_2197 0.50 -1.0 2,333,328 - Dsui_2197 0.51 -0.7 2,333,357 + Dsui_2197 0.53 -0.6 2,333,446 + Dsui_2197 0.60 -0.8 2,333,505 - -1.1 2,333,510 + Dsui_2197 0.65 -0.8 2,333,541 + Dsui_2197 0.67 -0.9 2,333,541 + Dsui_2197 0.67 -0.2 2,333,560 + Dsui_2197 0.69 -0.7 2,333,636 + Dsui_2197 0.75 -0.2 2,333,644 - Dsui_2197 0.75 -1.1 2,333,695 + Dsui_2197 0.79 -1.0 2,333,705 - Dsui_2197 0.80 +0.2 2,333,718 - Dsui_2197 0.81 -0.1 2,333,825 + Dsui_2197 0.90 -0.8 2,333,833 + -1.1 2,333,918 + +0.1 2,333,918 + +0.7 2,333,931 - +2.5 2,333,933 + +0.8 2,333,933 + +0.4 2,334,002 + +2.6 2,334,038 + +3.4 2,334,038 + +3.8 2,334,046 - +2.5 2,334,071 - +3.6 2,334,079 + +2.9 2,334,108 + +3.1 2,334,108 + +2.6 2,334,628 + Dsui_2198 0.23 +3.2 2,334,745 + Dsui_2198 0.28 +2.0 2,334,755 + Dsui_2198 0.28 +3.3 2,334,779 + Dsui_2198 0.29 +3.2 2,334,779 + Dsui_2198 0.29 +3.6 2,334,779 + Dsui_2198 0.29 +2.8 2,334,779 + Dsui_2198 0.29 +3.2 2,334,787 - +2.1 2,334,908 + Dsui_2198 0.35 +2.6
Or see this region's nucleotide sequence