Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1990 and Dsui_1991 overlap by 35 nucleotides Dsui_1991 and Dsui_1992 are separated by 15 nucleotides Dsui_1992 and Dsui_1993 are separated by 94 nucleotides Dsui_1993 and Dsui_1994 are separated by 19 nucleotides Dsui_1994 and Dsui_1995 are separated by 186 nucleotides
Dsui_1990: Dsui_1990 - primosomal replication protein N, at 2,099,121 to 2,099,411
_1990
Dsui_1991: Dsui_1991 - ribosomal protein S18, at 2,099,377 to 2,099,655
_1991
Dsui_1992: Dsui_1992 - ribosomal protein L9, at 2,099,671 to 2,100,120
_1992
Dsui_1993: Dsui_1993 - replicative DNA helicase, at 2,100,215 to 2,101,696
_1993
Dsui_1994: Dsui_1994 - NADPH-dependent FMN reductase, at 2,101,716 to 2,102,207
_1994
Dsui_1995: Dsui_1995 - transglutaminase-like enzyme, predicted cysteine protease, at 2,102,394 to 2,103,605
_1995
Position (kb)
2100
2101
2102 Strain fitness (log2 ratio)
-2
-1
0
1 at 2099.769 kb on + strand, within Dsui_1992 at 2099.891 kb on + strand, within Dsui_1992 at 2100.163 kb on + strand at 2100.218 kb on - strand at 2100.228 kb on + strand at 2100.228 kb on + strand at 2101.750 kb on - strand at 2101.845 kb on - strand, within Dsui_1994 at 2101.864 kb on - strand at 2101.950 kb on + strand, within Dsui_1994 at 2102.163 kb on - strand at 2102.261 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 2,099,769 + Dsui_1992 0.22 -1.8 2,099,891 + Dsui_1992 0.49 -1.2 2,100,163 + +0.3 2,100,218 - +0.1 2,100,228 + +0.6 2,100,228 + +0.5 2,101,750 - +0.1 2,101,845 - Dsui_1994 0.26 +0.4 2,101,864 - +1.5 2,101,950 + Dsui_1994 0.48 -0.5 2,102,163 - -0.3 2,102,261 - -0.6
Or see this region's nucleotide sequence