Strain Fitness in Dechlorosoma suillum PS around Dsui_1940

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1939 and Dsui_1940 are separated by 3 nucleotidesDsui_1940 and Dsui_1941 are separated by 57 nucleotidesDsui_1941 and Dsui_1942 are separated by 48 nucleotides Dsui_1939: Dsui_1939 - phosphoserine aminotransferase, at 2,050,063 to 2,051,193 _1939 Dsui_1940: Dsui_1940 - chorismate mutase, clade 2, at 2,051,197 to 2,052,321 _1940 Dsui_1941: Dsui_1941 - prephenate dehydrogenase, at 2,052,379 to 2,053,251 _1941 Dsui_1942: Dsui_1942 - cytidylate kinase/3-phosphoshikimate 1-carboxyvinyltransferase, at 2,053,300 to 2,055,234 _1942 Position (kb) 2051 2052 2053Strain fitness (log2 ratio) -1 0 1at 2051.187 kb on + strandat 2052.296 kb on + strandat 2052.296 kb on + strandat 2052.296 kb on + strandat 2052.296 kb on + strandat 2052.351 kb on - strandat 2052.364 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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2,051,187 + -1.7
2,052,296 + +0.4
2,052,296 + +0.2
2,052,296 + +0.5
2,052,296 + -0.8
2,052,351 - +1.5
2,052,364 + +0.1

Or see this region's nucleotide sequence