Strain Fitness in Dechlorosoma suillum PS around Dsui_1631

Experiment: Anaero. lactate (C), chlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1630 and Dsui_1631 are separated by 139 nucleotidesDsui_1631 and Dsui_1632 are separated by 18 nucleotidesDsui_1632 and Dsui_1633 are separated by 17 nucleotidesDsui_1633 and Dsui_1634 are separated by 69 nucleotides Dsui_1630: Dsui_1630 - cytochrome c oxidase, cbb3-type, subunit III, at 1,713,274 to 1,714,173 _1630 Dsui_1631: Dsui_1631 - cytochrome c oxidase accessory protein FixG, at 1,714,313 to 1,715,725 _1631 Dsui_1632: Dsui_1632 - hypothetical protein, at 1,715,744 to 1,716,268 _1632 Dsui_1633: Dsui_1633 - Protein of unknown function (DUF3149), at 1,716,286 to 1,716,420 _1633 Dsui_1634: Dsui_1634 - universal stress protein UspA-like protein, at 1,716,490 to 1,716,933 _1634 Position (kb) 1714 1715 1716Strain fitness (log2 ratio) -3 -2 -1 0 1at 1714.239 kb on + strandat 1714.239 kb on + strandat 1714.247 kb on - strandat 1714.268 kb on + strandat 1714.274 kb on + strandat 1714.290 kb on - strandat 1714.401 kb on + strandat 1714.456 kb on + strand, within Dsui_1631at 1714.664 kb on + strand, within Dsui_1631at 1714.694 kb on - strand, within Dsui_1631at 1714.699 kb on + strand, within Dsui_1631at 1714.707 kb on - strand, within Dsui_1631at 1714.732 kb on + strand, within Dsui_1631at 1714.823 kb on - strand, within Dsui_1631at 1715.092 kb on + strand, within Dsui_1631at 1715.092 kb on + strand, within Dsui_1631at 1715.100 kb on - strand, within Dsui_1631at 1715.121 kb on + strand, within Dsui_1631at 1715.167 kb on + strand, within Dsui_1631at 1715.276 kb on + strand, within Dsui_1631at 1715.284 kb on + strand, within Dsui_1631at 1715.411 kb on - strand, within Dsui_1631at 1715.429 kb on + strand, within Dsui_1631at 1715.442 kb on - strand, within Dsui_1631at 1715.467 kb on + strand, within Dsui_1631at 1715.597 kb on + strandat 1715.639 kb on - strandat 1715.709 kb on + strandat 1716.228 kb on + strandat 1716.228 kb on + strandat 1716.236 kb on - strandat 1716.276 kb on + strandat 1716.282 kb on + strandat 1716.282 kb on + strandat 1716.290 kb on - strandat 1716.344 kb on + strand, within Dsui_1633at 1716.344 kb on + strand, within Dsui_1633at 1716.354 kb on + strand, within Dsui_1633at 1716.371 kb on + strand, within Dsui_1633at 1716.422 kb on - strandat 1716.489 kb on - strandat 1716.489 kb on - strandat 1716.501 kb on - strandat 1716.507 kb on - strandat 1716.513 kb on + strandat 1716.523 kb on + strandat 1716.531 kb on - strandat 1716.531 kb on - strandat 1716.531 kb on - strandat 1716.531 kb on - strandat 1716.531 kb on - strandat 1716.540 kb on - strand, within Dsui_1634at 1716.683 kb on + strand, within Dsui_1634at 1716.683 kb on + strand, within Dsui_1634at 1716.683 kb on + strand, within Dsui_1634at 1716.683 kb on + strand, within Dsui_1634

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
remove
1,714,239 + +0.1
1,714,239 + +0.1
1,714,247 - -0.4
1,714,268 + +0.7
1,714,274 + +0.1
1,714,290 - +0.1
1,714,401 + -0.9
1,714,456 + Dsui_1631 0.10 -0.8
1,714,664 + Dsui_1631 0.25 -1.4
1,714,694 - Dsui_1631 0.27 -3.0
1,714,699 + Dsui_1631 0.27 -0.6
1,714,707 - Dsui_1631 0.28 -1.7
1,714,732 + Dsui_1631 0.30 -1.7
1,714,823 - Dsui_1631 0.36 -3.4
1,715,092 + Dsui_1631 0.55 -0.6
1,715,092 + Dsui_1631 0.55 -0.9
1,715,100 - Dsui_1631 0.56 -0.4
1,715,121 + Dsui_1631 0.57 -0.6
1,715,167 + Dsui_1631 0.60 -1.0
1,715,276 + Dsui_1631 0.68 -0.8
1,715,284 + Dsui_1631 0.69 -0.6
1,715,411 - Dsui_1631 0.78 -1.6
1,715,429 + Dsui_1631 0.79 -1.3
1,715,442 - Dsui_1631 0.80 -1.7
1,715,467 + Dsui_1631 0.82 -0.5
1,715,597 + -0.7
1,715,639 - -1.1
1,715,709 + -0.3
1,716,228 + +0.1
1,716,228 + +0.3
1,716,236 - +0.2
1,716,276 + +0.4
1,716,282 + +0.2
1,716,282 + +0.2
1,716,290 - +0.0
1,716,344 + Dsui_1633 0.43 +0.2
1,716,344 + Dsui_1633 0.43 +0.2
1,716,354 + Dsui_1633 0.50 -0.0
1,716,371 + Dsui_1633 0.63 +0.2
1,716,422 - +0.1
1,716,489 - +0.6
1,716,489 - +0.4
1,716,501 - -0.6
1,716,507 - -0.4
1,716,513 + +0.3
1,716,523 + -0.4
1,716,531 - -0.2
1,716,531 - -1.1
1,716,531 - -0.3
1,716,531 - -0.3
1,716,531 - -1.1
1,716,540 - Dsui_1634 0.11 -0.3
1,716,683 + Dsui_1634 0.43 -0.1
1,716,683 + Dsui_1634 0.43 -0.8
1,716,683 + Dsui_1634 0.43 +0.2
1,716,683 + Dsui_1634 0.43 -0.1

Or see this region's nucleotide sequence