Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1389 and Dsui_1390 are separated by 18 nucleotides Dsui_1390 and Dsui_1391 overlap by 4 nucleotides Dsui_1391 and Dsui_1392 are separated by 3 nucleotides
Dsui_1389: Dsui_1389 - hypothetical protein, at 1,446,979 to 1,447,482
_1389
Dsui_1390: Dsui_1390 - hypothetical protein, at 1,447,501 to 1,448,100
_1390
Dsui_1391: Dsui_1391 - hypothetical protein, at 1,448,097 to 1,449,641
_1391
Dsui_1392: Dsui_1392 - type II secretory pathway, component PulF, at 1,449,645 to 1,450,844
_1392
Position (kb)
1448
1449
1450 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1447.130 kb on - strand at 1447.277 kb on - strand at 1447.293 kb on + strand, within Dsui_1389 at 1447.299 kb on - strand, within Dsui_1389 at 1447.325 kb on + strand at 1447.450 kb on + strand at 1447.536 kb on - strand at 1447.550 kb on + strand at 1447.558 kb on - strand at 1447.558 kb on - strand at 1447.734 kb on - strand, within Dsui_1390 at 1447.735 kb on + strand at 1447.837 kb on + strand at 1447.897 kb on - strand, within Dsui_1390 at 1447.897 kb on - strand at 1447.926 kb on + strand at 1447.937 kb on + strand at 1448.041 kb on - strand at 1448.079 kb on + strand at 1448.154 kb on - strand at 1448.304 kb on - strand at 1448.328 kb on - strand, within Dsui_1391 at 1448.543 kb on + strand at 1448.543 kb on + strand at 1448.593 kb on - strand at 1448.614 kb on + strand at 1448.651 kb on - strand, within Dsui_1391 at 1448.659 kb on + strand, within Dsui_1391 at 1448.711 kb on + strand, within Dsui_1391 at 1448.736 kb on - strand at 1448.961 kb on + strand, within Dsui_1391 at 1449.197 kb on + strand, within Dsui_1391 at 1449.424 kb on + strand, within Dsui_1391 at 1449.449 kb on + strand, within Dsui_1391 at 1449.535 kb on - strand at 1449.590 kb on - strand at 1449.643 kb on + strand at 1449.812 kb on + strand, within Dsui_1392 at 1449.906 kb on + strand, within Dsui_1392 at 1449.975 kb on - strand at 1450.036 kb on - strand, within Dsui_1392 at 1450.236 kb on + strand, within Dsui_1392 at 1450.244 kb on - strand, within Dsui_1392 at 1450.292 kb on + strand, within Dsui_1392 at 1450.328 kb on - strand, within Dsui_1392 at 1450.457 kb on + strand, within Dsui_1392 at 1450.476 kb on - strand, within Dsui_1392 at 1450.479 kb on + strand, within Dsui_1392 at 1450.541 kb on + strand at 1450.545 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 1,447,130 - +3.0 1,447,277 - -1.4 1,447,293 + Dsui_1389 0.62 +0.2 1,447,299 - Dsui_1389 0.63 -1.6 1,447,325 + +2.0 1,447,450 + -0.2 1,447,536 - -0.9 1,447,550 + -1.2 1,447,558 - -1.0 1,447,558 - +1.4 1,447,734 - Dsui_1390 0.39 -1.6 1,447,735 + +1.1 1,447,837 + +1.4 1,447,897 - Dsui_1390 0.66 +0.4 1,447,897 - -0.2 1,447,926 + +0.4 1,447,937 + +2.4 1,448,041 - -0.2 1,448,079 + +0.3 1,448,154 - +1.4 1,448,304 - +1.0 1,448,328 - Dsui_1391 0.15 -0.9 1,448,543 + +2.0 1,448,543 + +1.4 1,448,593 - +0.8 1,448,614 + +1.4 1,448,651 - Dsui_1391 0.36 -1.5 1,448,659 + Dsui_1391 0.36 +0.5 1,448,711 + Dsui_1391 0.40 -0.9 1,448,736 - -0.4 1,448,961 + Dsui_1391 0.56 -0.9 1,449,197 + Dsui_1391 0.71 -0.2 1,449,424 + Dsui_1391 0.86 -0.7 1,449,449 + Dsui_1391 0.88 -0.3 1,449,535 - +0.4 1,449,590 - +0.6 1,449,643 + +0.4 1,449,812 + Dsui_1392 0.14 +0.1 1,449,906 + Dsui_1392 0.22 -0.9 1,449,975 - -0.2 1,450,036 - Dsui_1392 0.33 +0.2 1,450,236 + Dsui_1392 0.49 +0.8 1,450,244 - Dsui_1392 0.50 -0.5 1,450,292 + Dsui_1392 0.54 -3.2 1,450,328 - Dsui_1392 0.57 +0.2 1,450,457 + Dsui_1392 0.68 +0.1 1,450,476 - Dsui_1392 0.69 +1.2 1,450,479 + Dsui_1392 0.69 +0.3 1,450,541 + -0.6 1,450,545 - +1.4
Or see this region's nucleotide sequence