Strain Fitness in Dechlorosoma suillum PS around Dsui_1391

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1389 and Dsui_1390 are separated by 18 nucleotidesDsui_1390 and Dsui_1391 overlap by 4 nucleotidesDsui_1391 and Dsui_1392 are separated by 3 nucleotides Dsui_1389: Dsui_1389 - hypothetical protein, at 1,446,979 to 1,447,482 _1389 Dsui_1390: Dsui_1390 - hypothetical protein, at 1,447,501 to 1,448,100 _1390 Dsui_1391: Dsui_1391 - hypothetical protein, at 1,448,097 to 1,449,641 _1391 Dsui_1392: Dsui_1392 - type II secretory pathway, component PulF, at 1,449,645 to 1,450,844 _1392 Position (kb) 1448 1449 1450Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1447.130 kb on - strandat 1447.277 kb on - strandat 1447.293 kb on + strand, within Dsui_1389at 1447.299 kb on - strand, within Dsui_1389at 1447.325 kb on + strandat 1447.450 kb on + strandat 1447.536 kb on - strandat 1447.550 kb on + strandat 1447.558 kb on - strandat 1447.558 kb on - strandat 1447.734 kb on - strand, within Dsui_1390at 1447.735 kb on + strandat 1447.837 kb on + strandat 1447.897 kb on - strand, within Dsui_1390at 1447.897 kb on - strandat 1447.926 kb on + strandat 1447.937 kb on + strandat 1448.041 kb on - strandat 1448.079 kb on + strandat 1448.154 kb on - strandat 1448.304 kb on - strandat 1448.328 kb on - strand, within Dsui_1391at 1448.543 kb on + strandat 1448.543 kb on + strandat 1448.593 kb on - strandat 1448.614 kb on + strandat 1448.651 kb on - strand, within Dsui_1391at 1448.659 kb on + strand, within Dsui_1391at 1448.711 kb on + strand, within Dsui_1391at 1448.736 kb on - strandat 1448.961 kb on + strand, within Dsui_1391at 1449.197 kb on + strand, within Dsui_1391at 1449.424 kb on + strand, within Dsui_1391at 1449.449 kb on + strand, within Dsui_1391at 1449.535 kb on - strandat 1449.590 kb on - strandat 1449.643 kb on + strandat 1449.812 kb on + strand, within Dsui_1392at 1449.906 kb on + strand, within Dsui_1392at 1449.975 kb on - strandat 1450.036 kb on - strand, within Dsui_1392at 1450.236 kb on + strand, within Dsui_1392at 1450.244 kb on - strand, within Dsui_1392at 1450.292 kb on + strand, within Dsui_1392at 1450.328 kb on - strand, within Dsui_1392at 1450.457 kb on + strand, within Dsui_1392at 1450.476 kb on - strand, within Dsui_1392at 1450.479 kb on + strand, within Dsui_1392at 1450.541 kb on + strandat 1450.545 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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1,447,130 - +3.0
1,447,277 - -1.4
1,447,293 + Dsui_1389 0.62 +0.2
1,447,299 - Dsui_1389 0.63 -1.6
1,447,325 + +2.0
1,447,450 + -0.2
1,447,536 - -0.9
1,447,550 + -1.2
1,447,558 - -1.0
1,447,558 - +1.4
1,447,734 - Dsui_1390 0.39 -1.6
1,447,735 + +1.1
1,447,837 + +1.4
1,447,897 - Dsui_1390 0.66 +0.4
1,447,897 - -0.2
1,447,926 + +0.4
1,447,937 + +2.4
1,448,041 - -0.2
1,448,079 + +0.3
1,448,154 - +1.4
1,448,304 - +1.0
1,448,328 - Dsui_1391 0.15 -0.9
1,448,543 + +2.0
1,448,543 + +1.4
1,448,593 - +0.8
1,448,614 + +1.4
1,448,651 - Dsui_1391 0.36 -1.5
1,448,659 + Dsui_1391 0.36 +0.5
1,448,711 + Dsui_1391 0.40 -0.9
1,448,736 - -0.4
1,448,961 + Dsui_1391 0.56 -0.9
1,449,197 + Dsui_1391 0.71 -0.2
1,449,424 + Dsui_1391 0.86 -0.7
1,449,449 + Dsui_1391 0.88 -0.3
1,449,535 - +0.4
1,449,590 - +0.6
1,449,643 + +0.4
1,449,812 + Dsui_1392 0.14 +0.1
1,449,906 + Dsui_1392 0.22 -0.9
1,449,975 - -0.2
1,450,036 - Dsui_1392 0.33 +0.2
1,450,236 + Dsui_1392 0.49 +0.8
1,450,244 - Dsui_1392 0.50 -0.5
1,450,292 + Dsui_1392 0.54 -3.2
1,450,328 - Dsui_1392 0.57 +0.2
1,450,457 + Dsui_1392 0.68 +0.1
1,450,476 - Dsui_1392 0.69 +1.2
1,450,479 + Dsui_1392 0.69 +0.3
1,450,541 + -0.6
1,450,545 - +1.4

Or see this region's nucleotide sequence