Strain Fitness in Dechlorosoma suillum PS around Dsui_1239

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1238 and Dsui_1239 are separated by 15 nucleotidesDsui_1239 and Dsui_1240 overlap by 14 nucleotidesDsui_1240 and Dsui_1241 are separated by 13 nucleotides Dsui_1238: Dsui_1238 - thymidylate synthase, at 1,296,649 to 1,297,443 _1238 Dsui_1239: Dsui_1239 - glucose-6-phosphate isomerase, at 1,297,459 to 1,299,114 _1239 Dsui_1240: Dsui_1240 - dihydrofolate reductase, at 1,299,101 to 1,299,634 _1240 Dsui_1241: Dsui_1241 - hypothetical protein, at 1,299,648 to 1,300,391 _1241 Position (kb) 1297 1298 1299 1300Strain fitness (log2 ratio) -1 0 1at 1296.527 kb on - strandat 1300.003 kb on + strandat 1300.003 kb on + strandat 1300.015 kb on + strandat 1300.096 kb on - strand, within Dsui_1241

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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1,296,527 - +0.7
1,300,003 + +1.4
1,300,003 + +1.4
1,300,015 + +0.4
1,300,096 - Dsui_1241 0.60 +0.6

Or see this region's nucleotide sequence