Strain Fitness in Dechlorosoma suillum PS around Dsui_1174

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1172 and Dsui_1173 are separated by 17 nucleotidesDsui_1173 and Dsui_1174 overlap by 4 nucleotidesDsui_1174 and Dsui_1175 overlap by 4 nucleotides Dsui_1172: Dsui_1172 - c-type cytochrome biogenesis protein CcmF, at 1,226,431 to 1,228,422 _1172 Dsui_1173: Dsui_1173 - thiol-disulfide isomerase-like thioredoxin, at 1,228,440 to 1,229,024 _1173 Dsui_1174: Dsui_1174 - uncharacterized protein involved in biosynthesis of c-type cytochromes, at 1,229,021 to 1,229,536 _1174 Dsui_1175: Dsui_1175 - cytochrome c-type biogenesis protein CcmI, at 1,229,533 to 1,230,396 _1175 Position (kb) 1229 1230Strain fitness (log2 ratio) -1 0 1at 1228.437 kb on + strandat 1229.023 kb on - strandat 1229.596 kb on + strandat 1229.634 kb on + strand, within Dsui_1175at 1229.880 kb on + strand, within Dsui_1175at 1230.121 kb on + strand, within Dsui_1175at 1230.139 kb on - strandat 1230.194 kb on + strand, within Dsui_1175at 1230.272 kb on + strand, within Dsui_1175at 1230.342 kb on - strandat 1230.342 kb on - strandat 1230.466 kb on + strandat 1230.525 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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1,228,437 + +0.3
1,229,023 - -0.1
1,229,596 + -1.2
1,229,634 + Dsui_1175 0.12 -1.1
1,229,880 + Dsui_1175 0.40 -1.6
1,230,121 + Dsui_1175 0.68 -1.3
1,230,139 - +0.4
1,230,194 + Dsui_1175 0.77 -1.2
1,230,272 + Dsui_1175 0.86 -1.3
1,230,342 - +0.0
1,230,342 - -0.3
1,230,466 + +0.6
1,230,525 - +0.3

Or see this region's nucleotide sequence