Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1055 and Dsui_1056 are separated by 1 nucleotides Dsui_1056 and Dsui_1057 are separated by 146 nucleotides Dsui_1057 and Dsui_1058 are separated by 214 nucleotides Dsui_1058 and Dsui_1059 are separated by 3 nucleotides
Dsui_1055: Dsui_1055 - sporulation related protein, at 1,088,815 to 1,089,660
_1055
Dsui_1056: Dsui_1056 - dephospho-CoA kinase, at 1,089,662 to 1,090,279
_1056
Dsui_1057: Dsui_1057 - hypothetical protein, at 1,090,426 to 1,091,178
_1057
Dsui_1058: Dsui_1058 - hypothetical protein, at 1,091,393 to 1,091,602
_1058
Dsui_1059: Dsui_1059 - thiamine monophosphate synthase, at 1,091,606 to 1,092,553
_1059
Position (kb)
1090
1091
1092 Strain fitness (log2 ratio)
-2
-1
0
1 at 1089.472 kb on - strand, within Dsui_1055 at 1089.492 kb on + strand, within Dsui_1055 at 1089.492 kb on + strand, within Dsui_1055 at 1089.500 kb on - strand, within Dsui_1055 at 1089.630 kb on - strand at 1089.649 kb on + strand at 1089.654 kb on + strand at 1090.308 kb on + strand at 1090.309 kb on - strand at 1090.316 kb on - strand at 1090.324 kb on - strand at 1090.339 kb on + strand at 1090.403 kb on + strand at 1091.279 kb on + strand at 1091.413 kb on + strand at 1091.461 kb on + strand, within Dsui_1058 at 1091.558 kb on + strand, within Dsui_1058 at 1091.573 kb on - strand, within Dsui_1058 at 1091.596 kb on + strand at 1091.596 kb on + strand at 1091.604 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 1,089,472 - Dsui_1055 0.78 -1.9 1,089,492 + Dsui_1055 0.80 -2.3 1,089,492 + Dsui_1055 0.80 -1.1 1,089,500 - Dsui_1055 0.81 +0.4 1,089,630 - +1.4 1,089,649 + +0.3 1,089,654 + -0.7 1,090,308 + +0.3 1,090,309 - +0.7 1,090,316 - +1.0 1,090,324 - +0.4 1,090,339 + +0.8 1,090,403 + -0.0 1,091,279 + +0.1 1,091,413 + +0.6 1,091,461 + Dsui_1058 0.32 -0.2 1,091,558 + Dsui_1058 0.79 +0.8 1,091,573 - Dsui_1058 0.86 +0.5 1,091,596 + +0.4 1,091,596 + +0.4 1,091,604 - +0.1
Or see this region's nucleotide sequence