Strain Fitness in Dechlorosoma suillum PS around Dsui_1057

Experiment: Anaero. lactate (C), chlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1055 and Dsui_1056 are separated by 1 nucleotidesDsui_1056 and Dsui_1057 are separated by 146 nucleotidesDsui_1057 and Dsui_1058 are separated by 214 nucleotidesDsui_1058 and Dsui_1059 are separated by 3 nucleotides Dsui_1055: Dsui_1055 - sporulation related protein, at 1,088,815 to 1,089,660 _1055 Dsui_1056: Dsui_1056 - dephospho-CoA kinase, at 1,089,662 to 1,090,279 _1056 Dsui_1057: Dsui_1057 - hypothetical protein, at 1,090,426 to 1,091,178 _1057 Dsui_1058: Dsui_1058 - hypothetical protein, at 1,091,393 to 1,091,602 _1058 Dsui_1059: Dsui_1059 - thiamine monophosphate synthase, at 1,091,606 to 1,092,553 _1059 Position (kb) 1090 1091 1092Strain fitness (log2 ratio) -2 -1 0 1at 1089.472 kb on - strand, within Dsui_1055at 1089.492 kb on + strand, within Dsui_1055at 1089.492 kb on + strand, within Dsui_1055at 1089.500 kb on - strand, within Dsui_1055at 1089.630 kb on - strandat 1089.649 kb on + strandat 1089.654 kb on + strandat 1090.308 kb on + strandat 1090.309 kb on - strandat 1090.316 kb on - strandat 1090.324 kb on - strandat 1090.339 kb on + strandat 1090.403 kb on + strandat 1091.279 kb on + strandat 1091.413 kb on + strandat 1091.461 kb on + strand, within Dsui_1058at 1091.558 kb on + strand, within Dsui_1058at 1091.573 kb on - strand, within Dsui_1058at 1091.596 kb on + strandat 1091.596 kb on + strandat 1091.604 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
remove
1,089,472 - Dsui_1055 0.78 -1.9
1,089,492 + Dsui_1055 0.80 -2.3
1,089,492 + Dsui_1055 0.80 -1.1
1,089,500 - Dsui_1055 0.81 +0.4
1,089,630 - +1.4
1,089,649 + +0.3
1,089,654 + -0.7
1,090,308 + +0.3
1,090,309 - +0.7
1,090,316 - +1.0
1,090,324 - +0.4
1,090,339 + +0.8
1,090,403 + -0.0
1,091,279 + +0.1
1,091,413 + +0.6
1,091,461 + Dsui_1058 0.32 -0.2
1,091,558 + Dsui_1058 0.79 +0.8
1,091,573 - Dsui_1058 0.86 +0.5
1,091,596 + +0.4
1,091,596 + +0.4
1,091,604 - +0.1

Or see this region's nucleotide sequence